Rh2CG608600

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005928
Physical Location & Seq
Reverse (-)
78415378 .. 78420477
5100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG608600.1

Sequence Viewer

Length: 561 bp
ATGGAGGGAGCTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTTAGTCAAGGAGCAGGTAGCACTAGCAAGGAAGGCACAAAAAACATCGGCAAAGATCAAGCAAAGACGCATACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGCTAGAAGTAACGACAACGTTGAGATAGACATGGCCCTGCAGAAGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACATGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCAAGTTCTTTGAAGTGGAGAAGGAGGGCAGACTGACAAGACGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCACTTTTATAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAGAGCTACAGGAAAGGTTGTTGTGTACCCCATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

9.06

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 89 - 142 4.7e-14 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc36I ACCTGC 2 cut(s) 70, 116
AclI AACGTT 1 cut(s) 249
AclWI GGATC 1 cut(s) 455
AfaI GTAC 2 cut(s) 356, 548
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 4 cut(s) 306, 410, 497, 522
AluBI AGCT 3 cut(s) 11, 321, 527
AluI AGCT 3 cut(s) 11, 321, 527
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 32, 509
AlwI GGATC 1 cut(s) 455
AoxI GGCC 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspS9I GGNCC 2 cut(s) 265, 470
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 289, 457
AvaII GGWCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 1 cut(s) 560
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 32, 509
BfaI CTAG 2 cut(s) 135, 234
BfmI CTRYAG 2 cut(s) 269, 528
BfuAI ACCTGC 2 cut(s) 70, 116
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 265, 470
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 14, 214, 309, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 14, 214, 309, 363
BseGI GGATG 2 cut(s) 224, 552
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 452
BshFI GGCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 32, 509
BsnI GGCC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 166, 460
BspANI GGCC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 273
BspMI ACCTGC 2 cut(s) 70, 116
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 4 cut(s) 14, 214, 309, 363
BssMI GATC 2 cut(s) 166, 460
BssT1I CCWWGG 3 cut(s) 14, 309, 363
BstEII GGTNACC 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 224, 552
BstKTI GATC 2 cut(s) 169, 463
BstMAI GTCTC 2 cut(s) 32, 509
BstMBI GATC 2 cut(s) 166, 460
BstMWI GCNNNNNNNGC 2 cut(s) 144, 219
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 269, 528
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 224, 552
BtsIMutI CAGTG 2 cut(s) 56, 459
BveI ACCTGC 2 cut(s) 70, 116
Cfr13I GGNCC 2 cut(s) 265, 470
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 355, 547
CviAII CATG 5 cut(s) 70, 92, 262, 334, 558
CviJI RGCY 6 cut(s) 11, 233, 266, 321, 451, 527
CviKI_1 RGCY 6 cut(s) 11, 233, 266, 321, 451, 527
CviQI GTAC 2 cut(s) 355, 547
DpnI GATC 2 cut(s) 168, 462
DpnII GATC 2 cut(s) 166, 460
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 14, 309, 363
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 470
Eco53kI GAGCTC 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 506
EcoT14I CCWWGG 3 cut(s) 14, 309, 363
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 3 cut(s) 14, 309, 363
FaeI CATG 5 cut(s) 73, 95, 265, 337, 561
FatI CATG 5 cut(s) 69, 91, 261, 333, 557
FauNDI CATATG 1 cut(s) 204
FokI GGATG 2 cut(s) 231, 539
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 2 cut(s) 135, 234
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 73, 95, 265, 337, 561
HincII GTYRAC 2 cut(s) 316, 331
HindII GTYRAC 2 cut(s) 316, 331
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 289, 457
Hpy166II GTNNAC 4 cut(s) 280, 316, 331, 547
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 4 cut(s) 280, 316, 331, 547
HpyAV CCTTC 7 cut(s) 15, 137, 268, 382, 389, 412, 436
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 65, 95, 202, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 219
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 5 cut(s) 73, 95, 265, 337, 561
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 166, 460
LmnI GCTCC 3 cut(s) 8, 16, 122
LpnPI CCDG 9 cut(s) 75, 111, 117, 229, 281, 309, 453, 465, 516
LweI GCATC 1 cut(s) 209
MaeI CTAG 2 cut(s) 135, 234
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 239, 506
MalI GATC 2 cut(s) 168, 462
MboI GATC 2 cut(s) 166, 460
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 13
MnlI CCTC 3 cut(s) 103, 361, 415
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 330
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 144, 219
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 204
NdeII GATC 2 cut(s) 166, 460
NlaIII CATG 5 cut(s) 73, 95, 265, 337, 561
NsiI ATGCAT 1 cut(s) 97
PsiI TTATAA 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 506
PspPI GGNCC 2 cut(s) 265, 470
PstI CTGCAG 1 cut(s) 273
RsaI GTAC 2 cut(s) 356, 548
RsaNI GTAC 2 cut(s) 355, 547
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 166, 460
Sau96I GGNCC 2 cut(s) 265, 470
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 2 cut(s) 269, 528
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SspMI CTAG 2 cut(s) 135, 234
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 3 cut(s) 14, 309, 363
TaiI ACGT 1 cut(s) 252
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 56, 459
TspDTI ATGAA 2 cut(s) 72, 86
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 2 cut(s) 56, 459
VpaK11BI GGWCC 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 272
XspI CTAG 2 cut(s) 135, 234
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.