Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

86792705 .. 86793871

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG649000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTGGCTCTCAAACCCAAAAACCTGAGCTTTATTGAAGCTGCTAGCCTTCCCTTAGCTATTGAGACTGCGTATGGAGCGCTTGAAAGAGCGGAGCTTTCGGCTGGTAAATCCGTCCTTGTTTTGGGAGGCGCTGGGGGTGTTGGGACACATGTGATTCAGCTAGCTAAGCATGTTTTCGGGGCTTCCAAAGTAGCAGCTACTGCAAGCACTAAAAAACTGGATTTGTTGAGAAGCTTGGGTGCGGATTTGGCTATCGATTACACCAAGGAGAACATTGAAGACCTGCCAGAGAAATTTGATGTAGTCTATGATGCAGTTGGGCAGACTGACAAGGCAGTGAAGGCGGTGAAGGAAGGTGGGAAGGTAGTCACAATAGTAGGTCCAGTAACTCCTCCGGCGTTCAGATTTGTGGCCACCCCTACAGGGTCTATCTTGGAGAAACTGAAGCCTTACTTGGAGAGCGAGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCCCTTTTCTAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAAAGCTACAGGAAAGGTGGTTGTGTACCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

195

Amino Acids

20.48

Weight (kDa)

8.6

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_dehyd_C	PF16912	20 - 119	8.3e-07	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	47 - 127	3.2e-15	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	80 - 191	2.2e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	3 cut(s)	92, 245, 347
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	575
AfeI	AGCGCT	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	124, 426
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	38, 86, 281, 524, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	9 cut(s)	30, 41, 59, 97, 163, 167, 200, 237, 554
AluI	AGCT	9 cut(s)	30, 41, 59, 97, 163, 167, 200, 237, 554
Alw26I	GTCTC	2 cut(s)	59, 536
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor51HI	AGCGCT	1 cut(s)	81
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	41, 197
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	82, 134
AspS9I	GGNCC	2 cut(s)	383, 497
AsuHPI	GGTGA	2 cut(s)	361, 484
AsuNHI	GCTAGC	2 cut(s)	44, 163
AvaII	GGWCC	2 cut(s)	383, 497
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	28, 209
BccI	CCATC	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	59, 536
BfaI	CTAG	2 cut(s)	45, 164
BfmI	CTRYAG	2 cut(s)	423, 555
BfoI	RGCGCY	2 cut(s)	83, 135
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	42, 198
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	43, 199
Bme18I	GGWCC	2 cut(s)	383, 497
BmgT120I	GGNCC	2 cut(s)	383, 497
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	2 cut(s)	48, 167
BpiI	GAAGAC	1 cut(s)	288
Bpu10I	CCTNAGC	2 cut(s)	26, 55
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 426
Bse1I	ACTGG	3 cut(s)	225, 386, 479
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	124, 426
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	3 cut(s)	225, 386, 479
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	28, 209
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	124, 426
BsmAI	GTCTC	2 cut(s)	59, 536
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	92, 245, 347
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	294
BspOI	GCTAGC	2 cut(s)	48, 167
BspPI	GGATC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	225, 386, 479
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	46, 165, 208
BstDEI	CTNAG	3 cut(s)	26, 55, 168
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	579
BstH2I	RGCGCY	2 cut(s)	83, 135
BstHHI	GCGC	2 cut(s)	82, 134
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	59, 536
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
BstNSI	RCATGY	2 cut(s)	155, 176
BstPI	GGTNACC	1 cut(s)	533
BstSFI	CTRYAG	2 cut(s)	423, 555
BstV1I	GCAGC	2 cut(s)	28, 209
BstV2I	GAAGAC	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 486
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	46, 165, 208
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	82, 134
Cfr13I	GGNCC	2 cut(s)	383, 497
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	152, 173, 585
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	26, 55, 168
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	383, 497
Eco47III	AGCGCT	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	155, 176, 588
FaiI	YATR	6 cut(s)	75, 153, 174, 312, 502, 586
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	151, 172, 584
Fnu4HI	GCNGC	2 cut(s)	42, 198
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	42, 198
FspBI	CTAG	2 cut(s)	45, 164
GlaI	GCGC	2 cut(s)	81, 133
GluI	GCNGC	2 cut(s)	42, 198
GsaI	CCCAGC	1 cut(s)	138
HaeII	RGCGCY	2 cut(s)	83, 135
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	2 cut(s)	82, 134
Hin1II	CATG	3 cut(s)	155, 176, 588
Hin6I	GCGC	2 cut(s)	80, 132
HinP1I	GCGC	2 cut(s)	80, 132
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	361, 484
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	1 cut(s)	407
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	6 cut(s)	59, 337, 346, 350, 358, 463
HpyCH4V	TGCA	2 cut(s)	206, 317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
HpyF3I	CTNAG	3 cut(s)	26, 55, 168
Hsp92II	CATG	3 cut(s)	155, 176, 588
HspAI	GCGC	2 cut(s)	80, 132
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	2 cut(s)	77, 94
Lsp1109I	GCAGC	2 cut(s)	28, 209
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	45, 164
MaeIII	GTNAC	3 cut(s)	370, 388, 533
MalI	GATC	1 cut(s)	489
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	2 cut(s)	122, 405
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
NdeII	GATC	1 cut(s)	487
NheI	GCTAGC	2 cut(s)	44, 163
NlaIII	CATG	3 cut(s)	155, 176, 588
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	155, 176
PciI	ACATGT	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	43, 199
PscI	ACATGT	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	383, 497
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SatI	GCNGC	2 cut(s)	42, 198
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	383, 497
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	2 cut(s)	423, 555
SinI	GGWCC	2 cut(s)	383, 497
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	92, 245, 347
SspMI	CTAG	2 cut(s)	45, 164
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	2 cut(s)	345, 486
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	41, 197
Tsp45I	GTSAC	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	345, 486
VpaK11BI	GGWCC	2 cut(s)	383, 497
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	2 cut(s)	155, 176
XspI	CTAG	2 cut(s)	45, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.