RLG00000022023

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005928
Physical Location & Seq
Reverse (-)
80041743 .. 80044438
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022023

Sequence Viewer

Length: 516 bp
ATGCCTCCGGGGTTCAGATTTGTGCTCACCCCTACAGGTTCTATCTTGGAGAAACTGAAGCCGTACTCGGGGAGCAGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCACTTTTATAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAGAGCTACAGGAAAGAGTACTTTGATCACGGGGAGAAGACGAGATGAAAGTGAACTTTCATGTGATTTGGGATGGTCCGAGAAGAGGTGCCATTGTCCGGAACCACTGGGGAGAGATGATGGATGGCGTCTCTGCGTTCGTTCCGACAAATTCGAAGCTCGAGGCAGAGGCCAGGCTGCTGCCTTGGTCTCCAGGCTTGCCCAGACTCAAGGTTCCTACAAGATCATTTTTCAGTGTTCGAGTCCATTTCTGGTGAGATCTATTTCCACGGTTTCTTCCCTCCTCGACAGCTGGGTGTTCAAGGCAGATTTTCTTGAAGCGATCGACAATTGCAAAAATCTGGAGGGATTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

172

Amino Acids

19.13

Weight (kDa)

9.2

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 2 cut(s) 65, 178
AfiI CCNNNNNNNGG 3 cut(s) 68, 243, 256
AgsI TTSAA 4 cut(s) 134, 159, 460, 476
AjnI CCWGG 2 cut(s) 330, 350
AluBI AGCT 3 cut(s) 164, 317, 450
AluI AGCT 3 cut(s) 164, 317, 450
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 3 cut(s) 146, 293, 352
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 2 cut(s) 67, 318
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 335, 338
ApoI RAATTY 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 107, 234
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 19, 94, 424
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 2 cut(s) 67, 318
AvaII GGWCC 2 cut(s) 107, 234
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 322, 325
BccI CCATC 3 cut(s) 225, 272, 276
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 332, 352
BclI TGATCA 1 cut(s) 183
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 146, 293, 352
BfmI CTRYAG 2 cut(s) 33, 165
BglII AGATCT 1 cut(s) 416
BisI GCNGC 2 cut(s) 336, 339
BlsI GCNGC 2 cut(s) 337, 340
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 3 cut(s) 9, 332, 352
Bme18I GGWCC 2 cut(s) 107, 234
BmeT110I CYCGRG 2 cut(s) 67, 318
BmgT120I GGNCC 2 cut(s) 107, 234
BmiI GGNNCC 3 cut(s) 248, 261, 373
BmrFI CCNGG 3 cut(s) 9, 332, 352
BmrI ACTGGG 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 170, 351
BpuMI CCSGG 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 3 cut(s) 8, 342, 426
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 243, 256
Bse1I ACTGG 2 cut(s) 89, 270
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 332, 352
BseDI CCNNGG 3 cut(s) 8, 342, 426
BseGI GGATG 2 cut(s) 236, 287
BseLI CCNNNNNNNGG 3 cut(s) 68, 243, 256
BseNI ACTGG 2 cut(s) 89, 270
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 322, 325
BseYI CCCAGC 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 2 cut(s) 67, 318
BsiSI CCGG 2 cut(s) 8, 257
BslI CCNNNNNNNGG 3 cut(s) 68, 243, 256
BsmAI GTCTC 3 cut(s) 146, 293, 352
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 352
BsoBI CYCGRG 2 cut(s) 67, 318
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 5 cut(s) 97, 183, 381, 416, 480
BspANI GGCC 1 cut(s) 330
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 248, 261, 373
BspPI GGATC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 89, 270
BssECI CCNNGG 3 cut(s) 8, 342, 426
BssMI GATC 5 cut(s) 97, 183, 381, 416, 480
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 332, 352
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 236, 287
BstKTI GATC 5 cut(s) 100, 186, 384, 419, 483
BstMAI GTCTC 3 cut(s) 146, 293, 352
BstMBI GATC 5 cut(s) 97, 183, 381, 416, 480
BstMCI CGRYCG 1 cut(s) 483
BstNI CCWGG 2 cut(s) 332, 352
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 3 cut(s) 7, 330, 350
BstSFI CTRYAG 2 cut(s) 33, 165
BstV1I GCAGC 2 cut(s) 322, 325
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 236, 287
BtsIMutI CAGTG 3 cut(s) 96, 263, 398
Cac8I GCNNGC 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 107, 234
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 64, 177
CviAII CATG 1 cut(s) 219
CviJI RGCY 8 cut(s) 61, 88, 164, 317, 330, 335, 355, 450
CviKI_1 RGCY 8 cut(s) 61, 88, 164, 317, 330, 335, 355, 450
CviQI GTAC 2 cut(s) 64, 177
DpnI GATC 5 cut(s) 99, 185, 383, 418, 482
DpnII GATC 5 cut(s) 97, 183, 381, 416, 480
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 107, 234
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 67, 318
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 330, 350
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 222
FaiI YATR 3 cut(s) 112, 123, 220
FatI CATG 1 cut(s) 218
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 336, 339
FokI GGATG 2 cut(s) 243, 294
Fsp4HI GCNGC 2 cut(s) 336, 339
GluI GCNGC 2 cut(s) 336, 339
GsaI CCCAGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 1 cut(s) 330
HapII CCGG 2 cut(s) 8, 257
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 1 cut(s) 222
HinfI GANTC 2 cut(s) 364, 400
HpaII CCGG 2 cut(s) 8, 257
HphI GGTGA 3 cut(s) 19, 94, 424
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 17, 238, 304
Hpy188III TCNNGA 4 cut(s) 159, 257, 473, 500
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4V TGCA 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 5 cut(s) 97, 183, 381, 416, 480
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 2 cut(s) 322, 325
MaeIII GTNAC 1 cut(s) 143
MalI GATC 5 cut(s) 99, 185, 383, 418, 482
MboI GATC 5 cut(s) 97, 183, 381, 416, 480
MboII GAAGA 3 cut(s) 207, 253, 426
MfeI CAATTG 1 cut(s) 487
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 308, 487
MlyI GAGTC 2 cut(s) 358, 409
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 7 cut(s) 15, 237, 314, 320, 449, 452, 496
MroI TCCGGA 1 cut(s) 256
MseI TTAA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 2 cut(s) 8, 257
MspR9I CCNGG 3 cut(s) 9, 332, 352
MunI CAATTG 1 cut(s) 487
MvaI CCWGG 2 cut(s) 332, 352
NciI CCSGG 1 cut(s) 9
NdeII GATC 5 cut(s) 97, 183, 381, 416, 480
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 3 cut(s) 248, 261, 373
NspV TTCGAA 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 318
PkrI GCNGC 2 cut(s) 337, 340
Ple19I CGATCG 1 cut(s) 483
PleI GAGTC 2 cut(s) 358, 408
PpsI GAGTC 2 cut(s) 358, 408
PsiI TTATAA 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 330, 350
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 2 cut(s) 330, 350
PspN4I GGNNCC 3 cut(s) 248, 261, 373
PspPI GGNCC 2 cut(s) 107, 234
PspXI VCTCGAGB 1 cut(s) 318
PsuI RGATCY 1 cut(s) 416
PvuI CGATCG 1 cut(s) 483
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 2 cut(s) 65, 178
RsaNI GTAC 2 cut(s) 64, 177
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 336, 339
Sau3AI GATC 5 cut(s) 97, 183, 381, 416, 480
Sau96I GGNCC 2 cut(s) 107, 234
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 2 cut(s) 358, 409
ScrFI CCNGG 3 cut(s) 9, 332, 352
SduI GDGCHC 1 cut(s) 27
SetI ASST 9 cut(s) 40, 84, 109, 150, 166, 248, 319, 373, 452
SfcI CTRYAG 2 cut(s) 33, 165
Sfr274I CTCGAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 312
SinI GGWCC 2 cut(s) 107, 234
SlaI CTCGAG 1 cut(s) 318
SmlI CTYRAG 3 cut(s) 149, 318, 366
SmoI CTYRAG 3 cut(s) 149, 318, 366
Sse9I AATT 2 cut(s) 308, 487
StyD4I CCNGG 3 cut(s) 7, 330, 350
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 430
TaqI TCGA 5 cut(s) 312, 319, 398, 444, 483
TasI AATT 2 cut(s) 308, 487
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 3 cut(s) 96, 270, 398
TseI GCWGC 2 cut(s) 335, 338
TspDTI ATGAA 2 cut(s) 207, 219
TspRI CASTG 3 cut(s) 96, 270, 398
VpaK11BI GGWCC 2 cut(s) 107, 234
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.