Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

85946539 .. 85949888

Gene Structure 3350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG640000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACAACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGCTAGAAGTACACTTCAGAAGCTAAAAGATACGTCAATTCGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGTGGAGAAGGAGAAAGGGAGTTCTTTTTCGATAAAGGAGTGTGTGATTTCAATTGCTTTGACACCACTTGAAGATATCACAGAGAGTCTCAAGATAGCTGGAGTCAAGGCACTAGATTCAACTGAGCGGAATTTGAGGCAGGCATCTCCAGCACTGAAGCAGGGGAAGGCTTTAATTGTGTCTGGATTAGCTGAATGGAAGGAGGATCAGGGTGCTGAATCGCTTGGCAAGCTGGCGGTTGGAATGGATGAGCTCCAACAGATTGTGGAGGACAAAAATAGAGATGGAATTGCTAAGAAACAGAAAGAACTGATACCCTACGTCGGAGGCTCACTTGCACTTGGGCAGACTGACAAGACGGTGAAGGTGGTGAGGGAAGGTGGAAAGGTGGTTACAATAGTAGGTCCAGTAATGCCTCCGGCGTTCAGATTTGTGCTCACCCCTACAGGGTCTATCTTGGAGAAACTGAAGCCGTACTCGAGGAGCAGGAAGGTGAATCCAGTGCTTGATCCCACAGGTCCATATCACTTTTATAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAGAGCTACAGGAAAGGTTGTTGTGTACCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

279

Amino Acids

30.57

Weight (kDa)

9.16

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	32 - 82	4.3e-14	Ribosomal protein L6e
CYP38_PsbQ-like	PF21329	98 - 186	6.7e-21	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
ADH_zinc_N_2	PF13602	191 - 275	3.6e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AccBSI	CCGCTC	1 cut(s)	358
AciI	CCGC	2 cut(s)	358, 467
AclWI	GGATC	2 cut(s)	444, 734
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	3 cut(s)	53, 407, 719
AfaI	GTAC	4 cut(s)	64, 176, 707, 827
AfiI	CCNNNNNNNGG	2 cut(s)	554, 678
AgsI	TTSAA	7 cut(s)	126, 230, 282, 302, 351, 776, 801
AluBI	AGCT	7 cut(s)	76, 141, 329, 422, 463, 484, 806
AluI	AGCT	7 cut(s)	76, 141, 329, 422, 463, 484, 806
Alw21I	GWGCWC	2 cut(s)	486, 669
Alw26I	GTCTC	2 cut(s)	323, 788
AlwI	GGATC	2 cut(s)	444, 734
Ama87I	CYCGRG	1 cut(s)	709
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspS9I	GGNCC	2 cut(s)	635, 749
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	5 cut(s)	109, 604, 613, 661, 736
AvaI	CYCGRG	1 cut(s)	709
AvaII	GGWCC	2 cut(s)	635, 749
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	486, 669
BccI	CCATC	2 cut(s)	509, 839
BceAI	ACGGC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	323, 788
BfaI	CTAG	2 cut(s)	57, 344
BfmI	CTRYAG	2 cut(s)	675, 807
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	635, 749
BmeT110I	CYCGRG	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	635, 749
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	32, 383
BpmI	CTGGAG	2 cut(s)	351, 363
BpuEI	CTTGAG	2 cut(s)	305, 812
BpuMI	CCSGG	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	37, 129, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 678
Bse1I	ACTGG	2 cut(s)	638, 731
BseDI	CCNNGG	3 cut(s)	37, 129, 183
BseGI	GGATG	3 cut(s)	47, 484, 831
BseLI	CCNNNNNNNGG	2 cut(s)	554, 678
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	638, 731
BseRI	GAGGAG	1 cut(s)	727
BsiHKAI	GWGCWC	2 cut(s)	486, 669
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	2 cut(s)	39, 650
BslI	CCNNNNNNNGG	2 cut(s)	554, 678
BsmAI	GTCTC	2 cut(s)	323, 788
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	486, 669
Bsp143I	GATC	2 cut(s)	436, 739
BspACI	CCGC	2 cut(s)	358, 467
BspCNI	CTCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	444, 734
BsrBI	CCGCTC	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	638, 731
BssECI	CCNNGG	3 cut(s)	37, 129, 183
BssMI	GATC	2 cut(s)	436, 739
BssT1I	CCWWGG	2 cut(s)	129, 183
Bst4CI	ACNGT	1 cut(s)	592
BstC8I	GCNNGC	3 cut(s)	372, 461, 465
BstDEI	CTNAG	2 cut(s)	354, 525
BstEII	GGTNACC	1 cut(s)	785
BstF5I	GGATG	3 cut(s)	47, 484, 831
BstKTI	GATC	2 cut(s)	439, 742
BstMAI	GTCTC	2 cut(s)	323, 788
BstMBI	GATC	2 cut(s)	436, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 380, 460
BstPI	GGTNACC	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	675, 807
BtsCI	GGATG	3 cut(s)	47, 484, 831
BtsIMutI	CAGTG	2 cut(s)	383, 738
Cac8I	GCNNGC	3 cut(s)	372, 461, 465
Cfr13I	GGNCC	2 cut(s)	635, 749
Csp6I	GTAC	4 cut(s)	63, 175, 706, 826
CviAII	CATG	1 cut(s)	837
CviQI	GTAC	4 cut(s)	63, 175, 706, 826
DdeI	CTNAG	2 cut(s)	354, 525
DpnI	GATC	2 cut(s)	438, 741
DpnII	GATC	2 cut(s)	436, 739
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	129, 183
Eco24I	GRGCYC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	635, 749
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	53, 407, 719
Eco88I	CYCGRG	1 cut(s)	709
Eco91I	GGTNACC	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	785
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	129, 183
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	2 cut(s)	129, 183
FaeI	CATG	1 cut(s)	840
FaiI	YATR	6 cut(s)	27, 29, 111, 754, 765, 838
FatI	CATG	1 cut(s)	836
FauNDI	CATATG	1 cut(s)	27
FokI	GGATG	3 cut(s)	54, 491, 818
FriOI	GRGCYC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	57, 344
GsuI	CTGGAG	2 cut(s)	351, 363
HapII	CCGG	2 cut(s)	39, 650
Hin1II	CATG	1 cut(s)	840
HincII	GTYRAC	2 cut(s)	136, 151
HindII	GTYRAC	2 cut(s)	136, 151
HinfI	GANTC	5 cut(s)	316, 333, 347, 449, 727
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	39, 650
HphI	GGTGA	5 cut(s)	109, 604, 613, 661, 736
Hpy166II	GTNNAC	5 cut(s)	65, 100, 136, 151, 826
Hpy188I	TCNGA	3 cut(s)	72, 557, 659
Hpy188III	TCNNGA	3 cut(s)	322, 414, 801
Hpy8I	GTNNAC	5 cut(s)	65, 100, 136, 151, 826
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	8 cut(s)	202, 209, 232, 391, 424, 589, 602, 715
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	3 cut(s)	86, 153, 552
HpyCH4V	TGCA	2 cut(s)	25, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 380, 460
HpyF3I	CTNAG	2 cut(s)	354, 525
HpySE526I	ACGT	3 cut(s)	86, 153, 552
Hsp92II	CATG	1 cut(s)	840
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	436, 739
LmnI	GCTCC	2 cut(s)	489, 714
LweI	GCATC	2 cut(s)	32, 383
MaeI	CTAG	2 cut(s)	57, 344
MaeII	ACGT	3 cut(s)	86, 153, 552
MaeIII	GTNAC	2 cut(s)	622, 785
MalI	GATC	2 cut(s)	438, 741
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	2 cut(s)	436, 739
MboII	GAAGA	2 cut(s)	211, 314
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	486, 669
MluCI	AATT	5 cut(s)	90, 282, 361, 405, 519
MlyI	GAGTC	2 cut(s)	325, 342
MmeI	TCCRAC	3 cut(s)	451, 511, 535
MnlI	CCTC	8 cut(s)	181, 360, 427, 493, 551, 597, 657, 705
MseI	TTAA	2 cut(s)	150, 404
MspI	CCGG	2 cut(s)	39, 650
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	42, 380, 460
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	2 cut(s)	436, 739
NlaIII	CATG	1 cut(s)	840
PaeR7I	CTCGAG	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	347, 449, 727
PleI	GAGTC	2 cut(s)	324, 341
PpsI	GAGTC	2 cut(s)	324, 341
PsiI	TTATAA	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	486
PspEI	GGTNACC	1 cut(s)	785
PspPI	GGNCC	2 cut(s)	635, 749
PspXI	VCTCGAGB	1 cut(s)	709
RsaI	GTAC	4 cut(s)	64, 176, 707, 827
RsaNI	GTAC	4 cut(s)	63, 175, 706, 826
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	150, 404
Sau3AI	GATC	2 cut(s)	436, 739
Sau96I	GGNCC	2 cut(s)	635, 749
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	325, 342
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	486, 669
SfaNI	GCATC	2 cut(s)	32, 383
SfcI	CTRYAG	2 cut(s)	675, 807
Sfr274I	CTCGAG	1 cut(s)	709
SinI	GGWCC	2 cut(s)	635, 749
SlaI	CTCGAG	1 cut(s)	709
SmlI	CTYRAG	3 cut(s)	320, 709, 791
SmoI	CTYRAG	3 cut(s)	320, 709, 791
Sse9I	AATT	5 cut(s)	90, 282, 361, 405, 519
SsiI	CCGC	2 cut(s)	358, 467
SspMI	CTAG	2 cut(s)	57, 344
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	129, 183
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	3 cut(s)	89, 156, 555
TaqI	TCGA	2 cut(s)	260, 710
TasI	AATT	5 cut(s)	90, 282, 361, 405, 519
TatI	WGTACW	2 cut(s)	62, 174
TfiI	GAWTC	3 cut(s)	347, 449, 727
Tru1I	TTAA	2 cut(s)	150, 404
Tru9I	TTAA	2 cut(s)	150, 404
TscAI	CASTG	2 cut(s)	390, 738
TspRI	CASTG	2 cut(s)	390, 738
VpaK11BI	GGWCC	2 cut(s)	635, 749
XapI	RAATTY	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	709
XspI	CTAG	2 cut(s)	57, 344
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.