Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

44345157 .. 44346306

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1187100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAACCACCACTTAGTTATGAGCTAATGAAAAAGGCTTCGATAAGCCGAAAAAGATCGGATCTTTGGCCGAGTACACTGCTGCAGAAGAAAAGAGTGTTAGCTCTTAAGCCCAAAAATCTGAGTTTTGTTGAAGCTGCTAGCCTTCCCCTGGCCATTGAGACTGCCTATGAAGGGCTCGAACGAGTTGAATTCTCTGCCGGTAAATCCATCCTTGTTTTGGGAGGCGCTGGGGGAGTCGGAACACATGTTATTCAGCTAGCAAAGCATGTGTTTGGTGCTTCAAAAGTAGCAGCTACAGCGAGCACGAAAAAACTTGATCTTTTGAGAAGCTTTGGTGCTGATTTGGCTATTGATTACACCAAGGAGAACTTCGAAGACCTGCCCGAGAAATTCGATGTGGTTTATGATGCAGTTGGGGAGACTGACAGGGCATTGAAGGCGGTGAAGGAAGGCGGGAAGGTATTGACAATTGTTCCACCTGCGCCACCGGCATTCCTTTTTATGCTGACTTCAACCGGAACTGTATTAGAGAAACTGAAGCCTTACTTGGAGAGTGGGAAGGTGAGGCCGGTGCTTGATCCCACCGGCCCGTATCCATTTTCGAAGACCGTTGAAGCATTTGCCTATCTTGAAACCTCCAGAGCTACCGGAAAGGTGGTTGTGTATCCCATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

227

Amino Acids

24.45

Weight (kDa)

9.38

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	79 - 158	1.8e-13	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	112 - 222	2e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	2 cut(s)	390, 490
AciI	CCGC	2 cut(s)	443, 456
AclWI	GGATC	2 cut(s)	69, 575
AcoI	YGGCCR	2 cut(s)	68, 153
AcsI	RAATTY	2 cut(s)	191, 392
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	151, 174, 220
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	7 cut(s)	134, 191, 285, 439, 516, 617, 635
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	4 cut(s)	356, 388, 533, 565
AluBI	AGCT	7 cut(s)	25, 104, 137, 259, 296, 333, 647
AluI	AGCT	7 cut(s)	25, 104, 137, 259, 296, 333, 647
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	155, 416
AlwI	GGATC	2 cut(s)	69, 575
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	4 cut(s)	68, 153, 569, 589
ApeKI	GCWGC	3 cut(s)	82, 137, 293
ApoI	RAATTY	2 cut(s)	191, 392
AspLEI	GCGC	2 cut(s)	230, 487
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	457, 577
AsuII	TTCGAA	2 cut(s)	375, 605
AsuNHI	GCTAGC	2 cut(s)	140, 259
AvaI	CYCGRG	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	384, 614
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	69, 124, 305
BccI	CCATC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	2 cut(s)	606, 678
BcoDI	GTCTC	2 cut(s)	155, 416
BfaI	CTAG	2 cut(s)	141, 260
BfmI	CTRYAG	2 cut(s)	83, 297
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	390, 490
BfuI	GTATCC	2 cut(s)	606, 678
BisI	GCNGC	3 cut(s)	83, 138, 294
BlsI	GCNGC	3 cut(s)	84, 139, 295
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	590
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	400
BmtI	GCTAGC	2 cut(s)	144, 263
BpiI	GAAGAC	2 cut(s)	384, 614
BpmI	CTGGAG	1 cut(s)	625
Bpu14I	TTCGAA	2 cut(s)	375, 605
BsaJI	CCNNGG	2 cut(s)	150, 363
BsaWI	WCCGGW	2 cut(s)	518, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 174, 220
Bse118I	RCCGGY	4 cut(s)	200, 490, 571, 587
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	150, 363
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	151, 174, 220
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	69, 124, 305
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	4 cut(s)	70, 155, 571, 591
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	6 cut(s)	201, 491, 519, 572, 588, 651
BslI	CCNNNNNNNGG	3 cut(s)	151, 174, 220
BsmAI	GTCTC	2 cut(s)	155, 416
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	4 cut(s)	70, 155, 571, 591
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	2 cut(s)	375, 605
Bsp1286I	GDGCHC	2 cut(s)	180, 308
Bsp143I	GATC	4 cut(s)	56, 61, 319, 580
BspACI	CCGC	2 cut(s)	443, 456
BspANI	GGCC	4 cut(s)	70, 155, 571, 591
BspCNI	CTCAG	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	2 cut(s)	390, 490
BspOI	GCTAGC	2 cut(s)	144, 263
BspPI	GGATC	2 cut(s)	69, 575
BspT104I	TTCGAA	2 cut(s)	375, 605
BspTI	CTTAAG	1 cut(s)	107
BsrFI	RCCGGY	4 cut(s)	200, 490, 571, 587
BssAI	RCCGGY	4 cut(s)	200, 490, 571, 587
BssECI	CCNNGG	2 cut(s)	150, 363
BssMI	GATC	4 cut(s)	56, 61, 319, 580
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	526, 613
BstAFI	CTTAAG	1 cut(s)	107
BstBI	TTCGAA	2 cut(s)	375, 605
BstC8I	GCNNGC	3 cut(s)	142, 261, 304
BstDEI	CTNAG	2 cut(s)	14, 122
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	230, 487
BstKTI	GATC	4 cut(s)	59, 64, 322, 583
BstMAI	GTCTC	2 cut(s)	155, 416
BstMBI	GATC	4 cut(s)	56, 61, 319, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 299, 347, 440, 491
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	2 cut(s)	251, 272
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	2 cut(s)	83, 297
BstV1I	GCAGC	3 cut(s)	69, 124, 305
BstV2I	GAAGAC	2 cut(s)	384, 614
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	2 cut(s)	606, 678
BsuRI	GGCC	4 cut(s)	70, 155, 571, 591
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	2 cut(s)	390, 490
Cac8I	GCNNGC	3 cut(s)	142, 261, 304
CfoI	GCGC	2 cut(s)	230, 487
Cfr10I	RCCGGY	4 cut(s)	200, 490, 571, 587
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	248, 269, 678
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	14, 122
DpnI	GATC	4 cut(s)	58, 63, 321, 582
DpnII	GATC	4 cut(s)	56, 61, 319, 580
EaeI	YGGCCR	2 cut(s)	68, 153
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	251, 272, 681
FaiI	YATR	7 cut(s)	21, 171, 249, 270, 408, 506, 679
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 533, 565
FatI	CATG	3 cut(s)	247, 268, 677
FauI	CCCGC	1 cut(s)	449
Fnu4HI	GCNGC	3 cut(s)	83, 138, 294
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	83, 138, 294
FspBI	CTAG	2 cut(s)	141, 260
GlaI	GCGC	2 cut(s)	229, 486
GluI	GCNGC	3 cut(s)	83, 138, 294
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	70, 155, 571, 591
HapII	CCGG	6 cut(s)	201, 491, 519, 572, 588, 651
HhaI	GCGC	2 cut(s)	230, 487
Hin1II	CATG	3 cut(s)	251, 272, 681
Hin6I	GCGC	2 cut(s)	228, 485
HinP1I	GCGC	2 cut(s)	228, 485
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	6 cut(s)	201, 491, 519, 572, 588, 651
HphI	GGTGA	2 cut(s)	457, 577
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	61, 123, 242
Hpy188III	TCNNGA	2 cut(s)	632, 642
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	7 cut(s)	155, 167, 433, 442, 446, 454, 556
HpyCH4III	ACNGT	2 cut(s)	526, 613
HpyCH4V	TGCA	2 cut(s)	85, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 299, 347, 440, 491
HpyF3I	CTNAG	2 cut(s)	14, 122
Hsp92II	CATG	3 cut(s)	251, 272, 681
HspAI	GCGC	2 cut(s)	228, 485
Kzo9I	GATC	4 cut(s)	56, 61, 319, 580
Lsp1109I	GCAGC	3 cut(s)	69, 124, 305
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	141, 260
MalI	GATC	4 cut(s)	58, 63, 321, 582
MboI	GATC	4 cut(s)	56, 61, 319, 580
MboII	GAAGA	3 cut(s)	100, 389, 619
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	180, 308
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	191, 392, 471
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	218, 561, 649
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	6 cut(s)	201, 491, 519, 572, 588, 651
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	5 cut(s)	265, 299, 347, 440, 491
NdeII	GATC	4 cut(s)	56, 61, 319, 580
NheI	GCTAGC	2 cut(s)	140, 259
NlaIII	CATG	3 cut(s)	251, 272, 681
NmeAIII	GCCGAG	1 cut(s)	96
NspI	RCATGY	2 cut(s)	251, 272
NspV	TTCGAA	2 cut(s)	375, 605
PaqCI	CACCTGC	1 cut(s)	490
PciI	ACATGT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	84, 139, 295
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	83, 138, 294
Sau3AI	GATC	4 cut(s)	56, 61, 319, 580
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	180, 308
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	83, 297
SfuI	TTCGAA	2 cut(s)	375, 605
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	191, 392, 471
SsiI	CCGC	2 cut(s)	443, 456
SspMI	CTAG	2 cut(s)	141, 260
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	526, 613
TaqI	TCGA	5 cut(s)	41, 180, 375, 396, 605
TasI	AATT	3 cut(s)	191, 392, 471
TatI	WGTACW	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	82, 137, 293
TspDTI	ATGAA	3 cut(s)	17, 44, 186
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	191, 392
XceI	RCATGY	2 cut(s)	251, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	2 cut(s)	141, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.