Rh2DG650800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005928
Physical Location & Seq
Reverse (-)
87679772 .. 87680164
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG650800.1

Sequence Viewer

Length: 393 bp
ATGAAAGTGAACTTTCATGTGATCTGGGATGGTCTGAGAAGAGGTGCCGGAGTGGCGGCCATCATCCGGAACCACTGGGGAGAGATGGTGGATGGCGTCTCTGCGTTCGTTCAGGCAAATTCGAATCCCGAGGCAGAGGCCAAGGCTGCTGCCTTGGTCTCCAGGCTTGCACAGACTCAAGGTTCCTACAAGATCATTTTTCATTGTTCGAGTCCATTTCTGGTGAGATCTATTTCCACGGTTACTTCCCTCCTCGACGGCTGGGTGTTCAAGGCAGATTTGCTTGAAGCGATCGACAATTGCAAAAATCTGGAGGGATTTAAGTGGGAGCTGGCCAATGGGGAAGACAACTATGTGGCCATCGAGATTGCGAAGACTTTGATTCGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 zf-RVT

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

6.28

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 125 1.6e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 3 cut(s) 57, 333, 357
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 271, 287
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 103, 163
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 4 cut(s) 57, 138, 333, 357
ApeKI GCWGC 2 cut(s) 146, 149
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 128
BalI TGGCCA 2 cut(s) 335, 359
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 351, 380
BbvI GCAGC 2 cut(s) 133, 136
BccI CCATC 5 cut(s) 23, 68, 79, 86, 368
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 103, 163
BglI GCCNNNNNGGC 1 cut(s) 53
BglII AGATCT 1 cut(s) 227
BisI GCNGC 3 cut(s) 57, 147, 150
BlsI GCNGC 3 cut(s) 58, 148, 151
Bme1390I CCNGG 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 128
BmiI GGNNCC 3 cut(s) 46, 71, 184
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 351, 380
BpmI CTGGAG 2 cut(s) 145, 332
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 4 cut(s) 129, 141, 153, 237
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 66
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 4 cut(s) 129, 141, 153, 237
BseGI GGATG 3 cut(s) 34, 63, 97
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 133, 136
BseYI CCCAGC 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 59, 140, 335, 359
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 48, 67
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 103, 163
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 4 cut(s) 59, 140, 335, 359
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 66
Bsp143I GATC 4 cut(s) 21, 192, 227, 291
BspACI CCGC 1 cut(s) 56
BspANI GGCC 4 cut(s) 59, 140, 335, 359
BspCNI CTCAG 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 46, 71, 184
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 163
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 4 cut(s) 129, 141, 153, 237
BssMI GATC 4 cut(s) 21, 192, 227, 291
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 141, 153
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 168, 333
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 34, 63, 97
BstKTI GATC 4 cut(s) 24, 195, 230, 294
BstMAI GTCTC 2 cut(s) 103, 163
BstMBI GATC 4 cut(s) 21, 192, 227, 291
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 53, 146
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 133, 136
BstV2I GAAGAC 2 cut(s) 351, 380
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 4 cut(s) 59, 140, 335, 359
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 34, 63, 97
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 168, 333
CseI GACGC 1 cut(s) 85
CviAII CATG 1 cut(s) 17
CviJI RGCY 8 cut(s) 59, 140, 146, 166, 261, 331, 335, 359
CviKI_1 RGCY 8 cut(s) 59, 140, 146, 166, 261, 331, 335, 359
DdeI CTNAG 1 cut(s) 35
DpnI GATC 4 cut(s) 23, 194, 229, 293
DpnII GATC 4 cut(s) 21, 192, 227, 291
EaeI YGGCCR 3 cut(s) 57, 333, 357
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 141, 153
Eco31I GGTCTC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 141, 153
ErhI CCWWGG 2 cut(s) 141, 153
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 20
FaiI YATR 2 cut(s) 18, 354
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 57, 147, 150
FokI GGATG 3 cut(s) 41, 50, 104
Fsp4HI GCNGC 3 cut(s) 57, 147, 150
GluI GCNGC 3 cut(s) 57, 147, 150
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 2 cut(s) 145, 332
HaeIII GGCC 4 cut(s) 59, 140, 335, 359
HapII CCGG 2 cut(s) 48, 67
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 20
HinfI GANTC 4 cut(s) 124, 175, 211, 382
HpaII CCGG 2 cut(s) 48, 67
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 4 cut(s) 67, 128, 311, 364
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 170, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 146
HpyF3I CTNAG 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 66
Kzo9I GATC 4 cut(s) 21, 192, 227, 291
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 133, 136
MaeIII GTNAC 1 cut(s) 241
MalI GATC 4 cut(s) 23, 194, 229, 293
MboI GATC 4 cut(s) 21, 192, 227, 291
MboII GAAGA 3 cut(s) 51, 356, 385
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 1 cut(s) 227
MlsI TGGCCA 2 cut(s) 335, 359
MluCI AATT 2 cut(s) 118, 298
MluNI TGGCCA 2 cut(s) 335, 359
MlyI GAGTC 2 cut(s) 169, 220
MnlI CCTC 6 cut(s) 35, 124, 130, 260, 263, 307
Mox20I TGGCCA 2 cut(s) 335, 359
MroI TCCGGA 1 cut(s) 66
MscI TGGCCA 2 cut(s) 335, 359
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 2 cut(s) 335, 359
MspI CCGG 2 cut(s) 48, 67
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 53, 146
NdeII GATC 4 cut(s) 21, 192, 227, 291
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 3 cut(s) 46, 71, 184
NspV TTCGAA 1 cut(s) 122
PfeI GAWTC 2 cut(s) 124, 382
PkrI GCNGC 3 cut(s) 58, 148, 151
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 2 cut(s) 169, 219
PpsI GAGTC 2 cut(s) 169, 219
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 46, 71, 184
PsuI RGATCY 1 cut(s) 227
PvuI CGATCG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 57, 147, 150
Sau3AI GATC 4 cut(s) 21, 192, 227, 291
SchI GAGTC 2 cut(s) 169, 220
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 46, 184, 333
SfuI TTCGAA 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 118, 298
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 141, 153
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 5 cut(s) 122, 209, 255, 294, 363
TasI AATT 2 cut(s) 118, 298
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 124, 382
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 80
TseI GCWGC 2 cut(s) 146, 149
TspDTI ATGAA 3 cut(s) 5, 17, 191
TspRI CASTG 1 cut(s) 80
XapI RAATTY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.