RchiOBHm_Chr2g0171531

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005928
Physical Location & Seq
Reverse (-)
85144458 .. 85150227
5770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53894

Sequence Viewer

Length: 198 bp
ATGCCTCCGGCGTTCAGATTTGTGCTCACCCCTACAGGTTCTATCTTGGAGAAACTGAAGCCGTACTCGGGGAGCAGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCACTTTTATAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAGAGCTACAGGAAAGGTTGTTGTGTACCCCATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

65

Amino Acids

7.21

Weight (kDa)

9.75

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 10 - 61 6e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AclWI GGATC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 65, 185
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 134, 159
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 19, 94
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 33, 165
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 97
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 89
BssMI GATC 1 cut(s) 97
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 143
BstSFI CTRYAG 2 cut(s) 33, 165
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 64, 184
CviAII CATG 1 cut(s) 195
CviJI RGCY 3 cut(s) 61, 88, 164
CviKI_1 RGCY 3 cut(s) 61, 88, 164
CviQI GTAC 2 cut(s) 64, 184
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
FaeI CATG 1 cut(s) 198
FaiI YATR 3 cut(s) 112, 123, 196
FatI CATG 1 cut(s) 194
FokI GGATG 1 cut(s) 176
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 198
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 19, 94
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 73
Hsp92II CATG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 21, 21, 61, 90, 102, 153
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 27
MnlI CCTC 1 cut(s) 15
MspI CCGG 1 cut(s) 8
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 198
PsiI TTATAA 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 2 cut(s) 65, 185
RsaNI GTAC 2 cut(s) 64, 184
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 40, 84, 109, 150, 166, 177
SfcI CTRYAG 2 cut(s) 33, 165
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
TscAI CASTG 1 cut(s) 96
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.