pycom111g02690

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0005928
Physical Location & Seq
Reverse (-)
1617190 .. 1617624
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02690.1

Sequence Viewer

Length: 435 bp
ATGAAATTATCCAACCAAATAAAACACATCAAGGTTACAACATTATTTATTTATTTATCAGGAATTAATCAAACACGTTGTTTTGTGTTTCTGAAATTAACAAAAATAGGGGAGATTGACAGGGCAGTGAAGGCGGTGAAGGCAGGCGGGAAGGTATTGACAATTGTACGTCCAGTAGCGCCACCGGCATTCCTATTTATGATGACTTCAACCGGAACTGTATTAGAGAAACTGAAGCCTTACTTGGAGAGTGGGAAGGTGAGGCCGGTGCTTGATTCCACCGGCCCATATCCATTTTCGAAGACTGTTGAAGCATTTGCCTATCTTGAAACCTCCAGACCTACCGGAAAGGGTGGTTGTGTATCCCATTCCATGAAATCATTGAAAGTACTAGTTCAGCCATGCAGTCTGAATAAGGGCGGCGCAATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

145

Amino Acids

15.65

Weight (kDa)

10.02

Isoelectric Point (pI)

18.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 64 - 117 1.5e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 134, 147, 420
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 168, 390
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 210, 311, 329, 385
AhlI ACTAGT 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AoxI GGCC 2 cut(s) 263, 283
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 2 cut(s) 181, 425
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 148, 271
AsuII TTCGAA 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 308
BciVI GTATCC 1 cut(s) 373
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 182
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 1 cut(s) 421
BlsI GCNGC 1 cut(s) 422
BmcAI AGTACT 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 299
BsaWI WCCGGW 2 cut(s) 212, 344
Bse118I RCCGGY 3 cut(s) 184, 265, 281
Bse1I ACTGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 173
BshFI GGCC 2 cut(s) 265, 285
BsiSI CCGG 5 cut(s) 185, 213, 266, 282, 345
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 265, 285
Bsp119I TTCGAA 1 cut(s) 299
BspACI CCGC 3 cut(s) 134, 147, 420
BspANI GGCC 2 cut(s) 265, 285
BspT104I TTCGAA 1 cut(s) 299
BsrFI RCCGGY 3 cut(s) 184, 265, 281
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 3 cut(s) 184, 265, 281
Bst4CI ACNGT 2 cut(s) 220, 307
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 181, 425
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 185
BstV2I GAAGAC 1 cut(s) 308
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 265, 285
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 2 cut(s) 181, 425
Cfr10I RCCGGY 3 cut(s) 184, 265, 281
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 167, 389
CviAII CATG 2 cut(s) 373, 402
CviJI RGCY 4 cut(s) 238, 265, 285, 400
CviKI_1 RGCY 4 cut(s) 238, 265, 285, 400
CviQI GTAC 2 cut(s) 167, 389
Eco57I CTGAAG 1 cut(s) 254
FaeI CATG 2 cut(s) 376, 405
FaiI YATR 4 cut(s) 200, 289, 374, 403
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 2 cut(s) 372, 401
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 421
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 180, 424
GluI GCNGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 265, 285
HapII CCGG 5 cut(s) 185, 213, 266, 282, 345
HhaI GCGC 2 cut(s) 181, 425
Hin1II CATG 2 cut(s) 376, 405
Hin6I GCGC 2 cut(s) 179, 423
HinP1I GCGC 2 cut(s) 179, 423
HinfI GANTC 1 cut(s) 275
HpaII CCGG 5 cut(s) 185, 213, 266, 282, 345
HphI GGTGA 2 cut(s) 148, 271
Hpy188I TCNGA 2 cut(s) 93, 411
Hpy188III TCNNGA 3 cut(s) 60, 326, 336
HpyAV CCTTC 4 cut(s) 124, 133, 145, 250
HpyCH4III ACNGT 2 cut(s) 220, 307
HpyCH4IV ACGT 2 cut(s) 76, 169
HpyCH4V TGCA 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 185
HpySE526I ACGT 2 cut(s) 76, 169
Hsp92II CATG 2 cut(s) 376, 405
HspAI GCGC 2 cut(s) 179, 423
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 76, 169
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 1 cut(s) 313
MfeI CAATTG 1 cut(s) 162
MluCI AATT 4 cut(s) 5, 63, 95, 162
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 255, 343
MseI TTAA 2 cut(s) 66, 98
MspI CCGG 5 cut(s) 185, 213, 266, 282, 345
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 185
NlaIII CATG 2 cut(s) 376, 405
NspV TTCGAA 1 cut(s) 299
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 66
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 2 cut(s) 168, 390
RsaNI GTAC 2 cut(s) 167, 389
SaqAI TTAA 2 cut(s) 66, 98
SatI GCNGC 1 cut(s) 421
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 390
SetI ASST 7 cut(s) 36, 79, 156, 172, 261, 335, 343
SfuI TTCGAA 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 391
Sse9I AATT 4 cut(s) 5, 63, 95, 162
SsiI CCGC 3 cut(s) 134, 147, 420
SspMI CTAG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 220, 307
TaiI ACGT 2 cut(s) 79, 172
TaqI TCGA 1 cut(s) 299
TasI AATT 4 cut(s) 5, 63, 95, 162
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 66, 98
Tru9I TTAA 2 cut(s) 66, 98
TscAI CASTG 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 17, 389
TspRI CASTG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 66
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.