Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Forward (+)

4105682 .. 4109282

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTACAGCAGATGGGCTTGTGAAGCGAGGTGATGGAAGGGATAGGCCTTTTGTTTTATCAAGAGCATTATTTGCTGGAATTCAAAGGCATGGAGCAGTATGGACAGGAGATAATTCAGCTGATTGGGATCACCTTAGGGTTTCAGTTCCAATGGTTTTGACACTTGGTCTTATTGGGATCTCATTCTCAGGTGCTGATGTTGGTGGGTTTTTTGGCAATTCAGAACCTGAGTTGGGCCATGCCCATCATGACACCAAAAGGCGAGAACCATGGTTTTTTGGAGATAAAAATACTGAACGTATTAGGGAGGCCATACGCACTCGTTACATGTTGCTTCCATATTTCTACACATTATTCAGAGAGGCAAACACAACTGGTGTGCCAGTTGTTCGTCCATTATGGATGGAGTTTCCTTCTGAAGAAACTACTTTCAGCAATGACGAGGCTTTTATGATTGGAAACAGTCTTCTGGTGCAAGGGATTTATGCAGAGCGTGCAAGACATGCTTCACTGTTTTTGCCTGGAAAGGAATTATGGTATGACACAAAAACTGGAGTCGCATACAAGGGAGGTAAAATCTATAAGTTGGACGTTAATGAAGAAAGTGTTCCTGCCTTCCAAAGGGCTGGAACCATCATACCAAGGAAAGACCGGTTTCGTCAAAGTTCCACACAGATGGTGAATGATCCATACACTCTGAAAGGCGCTCTAATTGAACCCGCAAGTCAGAAGGCCGAAATTGAACTGGGCCCACTTCTCATGCATTCGAAGCAAGGTCCAACTGCGATAACAATCCGCAAACCCAATGTCCGGATAGCTGATGATTGGGTGATAAAAATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

283

Amino Acids

31.73

Weight (kDa)

9.0

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	2 - 119	2.8e-35	Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_3rd	PF21365	127 - 214	1e-22	Glycosyl hydrolase family 31 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	847
AccIII	TCCGGA	1 cut(s)	813
AciI	CCGC	2 cut(s)	723, 799
AclWI	GGATC	3 cut(s)	138, 188, 683
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	3 cut(s)	236, 624, 813
AflIII	ACRYGT	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	86, 719, 746
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	2 cut(s)	122, 821
AluI	AGCT	2 cut(s)	122, 821
AlwI	GGATC	3 cut(s)	138, 188, 683
AlwNI	CAGNNNCTG	2 cut(s)	197, 230
Aor13HI	TCCGGA	1 cut(s)	813
AoxI	GGCC	5 cut(s)	47, 238, 312, 735, 751
ApaI	GGGCCC	1 cut(s)	755
ApoI	RAATTY	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AsiGI	ACCGGT	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	4 cut(s)	238, 751, 752, 779
AsuHPI	GGTGA	4 cut(s)	44, 125, 694, 844
AsuII	TTCGAA	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	461
BccI	CCATC	6 cut(s)	8, 29, 255, 400, 644, 673
BciT130I	CCWGG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	779
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	4 cut(s)	238, 751, 752, 779
BmiI	GGNNCC	2 cut(s)	634, 753
BmrFI	CCNGG	1 cut(s)	525
BmrI	ACTGGG	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	770
BsaBI	GATNNNNATC	2 cut(s)	129, 794
BsaJI	CCNNGG	2 cut(s)	272, 644
BsaWI	WCCGGW	2 cut(s)	654, 813
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 624, 813
Bse118I	RCCGGY	1 cut(s)	654
Bse1I	ACTGG	4 cut(s)	382, 386, 559, 753
Bse21I	CCTNAGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	2 cut(s)	129, 794
BseAI	TCCGGA	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	272, 644
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	2 cut(s)	129, 794
BseLI	CCNNNNNNNGG	3 cut(s)	236, 624, 813
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	204, 222
BseNI	ACTGG	4 cut(s)	382, 386, 559, 753
BseSI	GKGCMC	1 cut(s)	755
BshFI	GGCC	5 cut(s)	49, 240, 314, 737, 753
BshTI	ACCGGT	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	655, 814
BslI	CCNNNNNNNGG	3 cut(s)	236, 624, 813
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	5 cut(s)	49, 240, 314, 737, 753
Bsp119I	TTCGAA	1 cut(s)	770
Bsp120I	GGGCCC	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp13I	TCCGGA	1 cut(s)	813
Bsp143I	GATC	3 cut(s)	130, 180, 688
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	723, 799
BspANI	GGCC	5 cut(s)	49, 240, 314, 737, 753
BspCNI	CTCAG	2 cut(s)	203, 223
BspEI	TCCGGA	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	634, 753
BspPI	GGATC	3 cut(s)	138, 188, 683
BspT104I	TTCGAA	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	654
BsrI	ACTGG	4 cut(s)	382, 386, 559, 753
BssAI	RCCGGY	1 cut(s)	654
BssECI	CCNNGG	2 cut(s)	272, 644
BssMI	GATC	3 cut(s)	130, 180, 688
BssT1I	CCWWGG	2 cut(s)	272, 644
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	467, 516
BstAPI	GCANNNNNTGC	3 cut(s)	74, 497, 506
BstBI	TTCGAA	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	137, 190, 231
BstDSI	CCRYGG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstF5I	GGATG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	3 cut(s)	133, 183, 691
BstMBI	GATC	3 cut(s)	130, 180, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 74, 497, 506, 772
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	2 cut(s)	334, 509
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	2 cut(s)	629, 679
BstYI	RGATCY	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	5 cut(s)	49, 240, 314, 737, 753
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	2 cut(s)	197, 230
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	710
Cfr10I	RCCGGY	1 cut(s)	654
Cfr13I	GGNCC	4 cut(s)	238, 751, 752, 779
CspAI	ACCGGT	1 cut(s)	654
CviAII	CATG	7 cut(s)	92, 242, 251, 273, 331, 506, 763
DdeI	CTNAG	3 cut(s)	137, 190, 231
DpnI	GATC	3 cut(s)	132, 182, 690
DpnII	GATC	3 cut(s)	130, 180, 688
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	272, 644
Eco147I	AGGCCT	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	272, 644
EcoT22I	ATGCAT	1 cut(s)	768
EcoT38I	GRGCYC	1 cut(s)	755
ErhI	CCWWGG	2 cut(s)	272, 644
FaeI	CATG	7 cut(s)	95, 245, 254, 276, 334, 509, 766
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FatI	CATG	7 cut(s)	91, 241, 250, 272, 330, 505, 762
FauI	CCCGC	1 cut(s)	730
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	755
GlaI	GCGC	1 cut(s)	709
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	5 cut(s)	49, 240, 314, 737, 753
HapII	CCGG	2 cut(s)	655, 814
HhaI	GCGC	1 cut(s)	710
Hin1II	CATG	7 cut(s)	95, 245, 254, 276, 334, 509, 766
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	2 cut(s)	655, 814
HphI	GGTGA	4 cut(s)	44, 125, 694, 844
Hpy188I	TCNGA	5 cut(s)	226, 362, 421, 702, 732
Hpy188III	TCNNGA	3 cut(s)	63, 251, 814
HpyAV	CCTTC	4 cut(s)	33, 426, 628, 727
HpyCH4III	ACNGT	2 cut(s)	467, 516
HpyCH4IV	ACGT	2 cut(s)	301, 594
HpyCH4V	TGCA	4 cut(s)	478, 491, 500, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 74, 497, 506, 772
HpyF3I	CTNAG	3 cut(s)	137, 190, 231
HpySE526I	ACGT	2 cut(s)	301, 594
Hsp92II	CATG	7 cut(s)	95, 245, 254, 276, 334, 509, 766
HspAI	GCGC	1 cut(s)	708
Kpn2I	TCCGGA	1 cut(s)	813
Kzo9I	GATC	3 cut(s)	130, 180, 688
LmnI	GCTCC	1 cut(s)	95
MaeII	ACGT	2 cut(s)	301, 594
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	132, 182, 690
MboI	GATC	3 cut(s)	130, 180, 688
MboII	GAAGA	3 cut(s)	434, 461, 614
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	6 cut(s)	81, 115, 220, 533, 714, 741
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	570, 806
MnlI	CCTC	5 cut(s)	23, 304, 358, 439, 566
Mph1103I	ATGCAT	1 cut(s)	768
MroI	TCCGGA	1 cut(s)	813
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	655, 814
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	5 cut(s)	25, 74, 497, 506, 772
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	130, 180, 688
NlaIII	CATG	7 cut(s)	95, 245, 254, 276, 334, 509, 766
NlaIV	GGNNCC	2 cut(s)	634, 753
NsiI	ATGCAT	1 cut(s)	768
NspI	RCATGY	2 cut(s)	334, 509
NspV	TTCGAA	1 cut(s)	770
PagI	TCATGA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	49
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	654
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	847
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	634, 753
PspOMI	GGGCCC	1 cut(s)	751
PspPI	GGNCC	4 cut(s)	238, 751, 752, 779
PstNI	CAGNNNCTG	2 cut(s)	197, 230
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	3 cut(s)	130, 180, 688
Sau96I	GGNCC	4 cut(s)	238, 751, 752, 779
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	755
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	770
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	6 cut(s)	81, 115, 220, 533, 714, 741
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	723, 799
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	272, 644
TaaI	ACNGT	2 cut(s)	467, 516
TaiI	ACGT	2 cut(s)	304, 597
TaqI	TCGA	1 cut(s)	770
TasI	AATT	6 cut(s)	81, 115, 220, 533, 714, 741
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	519
TspDTI	ATGAA	1 cut(s)	615
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	779
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	2 cut(s)	334, 509
XmnI	GAANNNNTTC	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.