Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Reverse (-)

17329724 .. 17330233

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAATCTTGCGCCTTAGGATCGACTAGCTCGATCGGCCCCGCAAGCGCTTCGAGGTCCCCGACGTCGTTTTGCCGGGAGTTCCGAATAAGAAGCTCGTCGCAGAGGCTTTCGACCGAGACGATCGACGGCGACGCGGCTCCGTCGACGATCGTGTTCTTATCCGACCGCTACGAGGCGGTGTTGCGGCACTATCCGTTCGAGGTTTACGTCCGTGAGAAGAGGAGTAACCGTGTAATTTCCGTGAATTCCGGTGGCTTAATTGATTTTGAGCACCGAGAGAGAAGGGAGAGGGTGAGGATTGGGAAGAGAGGTTTAGAGGGCACACGGATAGGAGGCCTTACGGCCCTCGGTCCATTAGTGTTGATGTGTCCTTTTATGGGGCTGATCATGTTTATGGGACTTCCGAAGTTTGAATTCGGTTCCGGTAGCAAGGCGAAACAGCGCGGTGGTTTACCTCGAAGCCGCCGTGCTCCACCGCCGAACTTCCGGACCTTCTCTACTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

11.12

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	2 cut(s)	137, 447
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	8 cut(s)	42, 137, 169, 179, 187, 447, 466, 479
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	247, 416
AcyI	GRCGYC	1 cut(s)	65
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	175, 380
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	2 cut(s)	30, 96
AluI	AGCT	2 cut(s)	30, 96
Alw21I	GWGCWC	2 cut(s)	276, 475
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	489
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	3 cut(s)	37, 337, 345
ApoI	RAATTY	2 cut(s)	247, 416
AspLEI	GCGC	3 cut(s)	14, 50, 447
AspS9I	GGNCC	5 cut(s)	38, 57, 346, 353, 492
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	57, 353, 492
AxyI	CCTNAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	276, 475
BceAI	ACGGC	3 cut(s)	145, 360, 453
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	27, 504
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	3 cut(s)	138, 188, 466
BlsI	GCNGC	3 cut(s)	139, 189, 467
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	3 cut(s)	57, 353, 492
BmgT120I	GGNCC	5 cut(s)	38, 57, 346, 353, 492
BmiI	GGNNCC	4 cut(s)	40, 59, 141, 424
BmrFI	CCNGG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	349
BsaWI	WCCGGW	3 cut(s)	251, 425, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 380
Bse21I	CCTNAGG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	175, 380
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	326
Bsh1236I	CGCG	2 cut(s)	137, 447
Bsh1285I	CGRYCG	5 cut(s)	36, 117, 126, 153, 169
BshFI	GGCC	3 cut(s)	39, 339, 347
BsiEI	CGRYCG	5 cut(s)	36, 117, 126, 153, 169
BsiHKAI	GWGCWC	2 cut(s)	276, 475
BsiSI	CCGG	4 cut(s)	76, 252, 426, 490
BslFI	GGGAC	2 cut(s)	43, 414
BslI	CCNNNNNNNGG	2 cut(s)	175, 380
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	43, 414
BsnI	GGCC	3 cut(s)	39, 339, 347
Bsp1286I	GDGCHC	3 cut(s)	276, 326, 475
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	20, 33, 123, 150, 387
BspACI	CCGC	8 cut(s)	42, 137, 169, 179, 187, 447, 466, 479
BspANI	GGCC	3 cut(s)	39, 339, 347
BspEI	TCCGGA	1 cut(s)	489
BspFNI	CGCG	2 cut(s)	137, 447
BspLI	GGNNCC	4 cut(s)	40, 59, 141, 424
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	5 cut(s)	20, 33, 123, 150, 387
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	215, 302
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	137, 447
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	3 cut(s)	14, 50, 447
BstKTI	GATC	5 cut(s)	23, 36, 126, 153, 390
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	20, 33, 123, 150, 387
BstMCI	CGRYCG	5 cut(s)	36, 117, 126, 153, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	2 cut(s)	137, 447
Bsu36I	CCTNAGG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	39, 339, 347
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	3 cut(s)	14, 50, 447
Cfr13I	GGNCC	5 cut(s)	38, 57, 346, 353, 492
CseI	GACGC	1 cut(s)	143
CviAII	CATG	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	5 cut(s)	22, 35, 125, 152, 389
DpnII	GATC	5 cut(s)	20, 33, 123, 150, 387
Eam1104I	CTCTTC	2 cut(s)	215, 302
EarI	CTCTTC	2 cut(s)	215, 302
Eco147I	AGGCCT	1 cut(s)	339
Eco47I	GGWCC	3 cut(s)	57, 353, 492
Eco47III	AGCGCT	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	247, 416
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	1 cut(s)	394
FaiI	YATR	3 cut(s)	380, 392, 398
FaqI	GGGAC	2 cut(s)	43, 414
FatI	CATG	1 cut(s)	390
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	138, 188, 466
Fsp4HI	GCNGC	3 cut(s)	138, 188, 466
FspBI	CTAG	2 cut(s)	27, 504
GlaI	GCGC	3 cut(s)	13, 49, 446
GluI	GCNGC	3 cut(s)	138, 188, 466
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	39, 339, 347
HapII	CCGG	4 cut(s)	76, 252, 426, 490
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	3 cut(s)	14, 50, 447
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	3 cut(s)	12, 48, 445
HinP1I	GCGC	3 cut(s)	12, 48, 445
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HpaII	CCGG	4 cut(s)	76, 252, 426, 490
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	147, 208, 455
Hpy188I	TCNGA	3 cut(s)	86, 166, 408
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	3 cut(s)	147, 208, 455
Hpy99I	CGWCG	7 cut(s)	67, 70, 103, 131, 137, 148, 151
HpyAV	CCTTC	2 cut(s)	279, 505
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	65, 210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
HpyF3I	CTNAG	1 cut(s)	16
HpySE526I	ACGT	2 cut(s)	65, 210
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	3 cut(s)	12, 48, 445
Kpn2I	TCCGGA	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	20, 33, 123, 150, 387
LmnI	GCTCC	2 cut(s)	145, 478
LpnPI	CCDG	4 cut(s)	89, 265, 439, 503
MaeI	CTAG	2 cut(s)	27, 504
MaeII	ACGT	2 cut(s)	65, 210
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	5 cut(s)	22, 35, 125, 152, 389
MboI	GATC	5 cut(s)	20, 33, 123, 150, 387
MboII	GAAGA	2 cut(s)	232, 319
MhlI	GDGCHC	3 cut(s)	276, 326, 475
MluCI	AATT	4 cut(s)	237, 247, 261, 416
MmeI	TCCRAC	1 cut(s)	189
MroI	TCCGGA	1 cut(s)	489
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	4 cut(s)	76, 252, 426, 490
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	137, 447
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	20, 33, 123, 150, 387
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	4 cut(s)	40, 59, 141, 424
PceI	AGGCCT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	5 cut(s)	29, 59, 119, 207, 466
PkrI	GCNGC	3 cut(s)	139, 189, 467
Ple19I	CGATCG	3 cut(s)	36, 126, 153
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	40, 59, 141, 424
PspPI	GGNCC	5 cut(s)	38, 57, 346, 353, 492
PspPPI	RGGWCCY	1 cut(s)	57
PvuI	CGATCG	3 cut(s)	36, 126, 153
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	3 cut(s)	138, 188, 466
Sau3AI	GATC	5 cut(s)	20, 33, 123, 150, 387
Sau96I	GGNCC	5 cut(s)	38, 57, 346, 353, 492
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	3 cut(s)	276, 326, 475
SgrDI	CGTCGACG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	57, 353, 492
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	237, 247, 261, 416
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	8 cut(s)	42, 137, 169, 179, 187, 447, 466, 479
SspMI	CTAG	2 cut(s)	27, 504
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	68, 213
TaqI	TCGA	8 cut(s)	23, 32, 53, 113, 126, 146, 201, 460
TaqII	GACCGA	2 cut(s)	131, 341
TasI	AATT	4 cut(s)	237, 247, 261, 416
TauI	GCSGC	3 cut(s)	140, 190, 468
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	5 cut(s)	132, 186, 203, 232, 343
VpaK11BI	GGWCC	3 cut(s)	57, 353, 492
XapI	RAATTY	2 cut(s)	247, 416
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	2 cut(s)	27, 504
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.