Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Reverse (-)

45063730 .. 45069574

Gene Structure 5845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATCTTTACGGTTCTAACTCAAGACGCCGCCATCTCCGACGGCGAGCTCACCAAGCTTGTCCCCGGGAGAATCGAACAAGAAGAAACCAGCTCCGATCAAATCAAGCCTTTGCTTCTCACTCCTTCCGCTTACCAAGACGAAATCTTGCGCCTTAGGATCGACAAGCTCGATCGGCCCCGCAAGCGCTTCGAGGTCACCGACGTCGTGTTGTCGGAGTTCCGAACAAGAAGCTCGGCTGCAGAGGCTTTCGACCGAGACGATCGACGGCGACGCGGCTCCGTCGACAATCGTGTTCTTATCCGACAAGCGAAGCGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCACCGCAGTCCAAAGATGTGGTTTCGAGGAGAAGATTGGAGTCCGGTGAAGAGGTTGCTCGTTTCGGCTATGTTGGGTCCCTTTTCCGATACCACCGACGGAGGGGAGTATTTGTATCCAAGGGACGTTGTGATGAAGGTATGCGTCAAGAAGCTCGGGTTGAGCTCTATACCGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

176

Amino Acids

20.38

Weight (kDa)

9.4

Isoelectric Point (pI)

66.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	276
AciI	CCGC	6 cut(s)	30, 129, 181, 276, 353, 522
AclWI	GGATC	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	27, 204
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	7 cut(s)	49, 58, 93, 169, 234, 503, 514
AluI	AGCT	7 cut(s)	49, 58, 93, 169, 234, 503, 514
Alw21I	GWGCWC	2 cut(s)	51, 516
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	65, 504
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	153, 189
AspS9I	GGNCC	2 cut(s)	177, 426
AsuC2I	CCSGG	2 cut(s)	66, 67
AsuHPI	GGTGA	4 cut(s)	43, 190, 342, 407
AvaI	CYCGRG	2 cut(s)	65, 504
AvaII	GGWCC	1 cut(s)	426
AxyI	CCTNAGG	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	51, 516
Bbv12I	GWGCWC	2 cut(s)	51, 516
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	58, 284
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciVI	GTATCC	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	66, 67
BcoDI	GTCTC	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	3 cut(s)	30, 240, 277
BlsI	GCNGC	3 cut(s)	31, 241, 278
Bme1390I	CCNGG	2 cut(s)	66, 67
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	2 cut(s)	65, 504
BmgT120I	GGNCC	2 cut(s)	177, 426
BmiI	GGNNCC	4 cut(s)	179, 280, 427, 428
BmrFI	CCNGG	2 cut(s)	66, 67
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	2 cut(s)	66, 67
BsaHI	GRCGYC	2 cut(s)	27, 204
BsaJI	CCNNGG	3 cut(s)	64, 65, 468
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse21I	CCTNAGG	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	64, 65, 468
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	3 cut(s)	175, 256, 265
BshFI	GGCC	1 cut(s)	178
BsiEI	CGRYCG	3 cut(s)	175, 256, 265
BsiHKAI	GWGCWC	2 cut(s)	51, 516
BsiHKCI	CYCGRG	2 cut(s)	65, 504
BsiSI	CCGG	2 cut(s)	66, 393
BslFI	GGGAC	3 cut(s)	47, 412, 486
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	3 cut(s)	47, 412, 486
BsnI	GGCC	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	65, 504
Bsp1286I	GDGCHC	2 cut(s)	51, 516
Bsp143I	GATC	5 cut(s)	3, 97, 159, 172, 262
BspACI	CCGC	6 cut(s)	30, 129, 181, 276, 353, 522
BspANI	GGCC	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	179, 280, 427, 428
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	64, 65, 468
BssMI	GATC	5 cut(s)	3, 97, 159, 172, 262
BssNI	GRCGYC	2 cut(s)	27, 204
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	2 cut(s)	27, 204
BstC8I	GCNNGC	2 cut(s)	47, 185
BstDEI	CTNAG	1 cut(s)	155
BstEII	GGTNACC	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	153, 189
BstKTI	GATC	5 cut(s)	6, 100, 162, 175, 265
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	5 cut(s)	3, 97, 159, 172, 262
BstMCI	CGRYCG	3 cut(s)	175, 256, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 175, 184, 245
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	64, 65
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	47, 185
CfoI	GCGC	2 cut(s)	153, 189
Cfr13I	GGNCC	2 cut(s)	177, 426
Cfr9I	CCCGGG	1 cut(s)	65
CseI	GACGC	3 cut(s)	35, 282, 482
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	5 cut(s)	5, 99, 161, 174, 264
DpnII	GATC	5 cut(s)	3, 97, 159, 172, 262
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	49, 514
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	2 cut(s)	51, 516
Eco47I	GGWCC	1 cut(s)	426
Eco47III	AGCGCT	1 cut(s)	188
Eco53kI	GAGCTC	2 cut(s)	49, 514
Eco81I	CCTNAGG	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	65, 504
Eco91I	GGTNACC	1 cut(s)	196
EcoICRI	GAGCTC	2 cut(s)	49, 514
EcoO109I	RGGNCCY	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	51, 516
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	252
FaiI	YATR	3 cut(s)	420, 491, 519
FaqI	GGGAC	3 cut(s)	47, 412, 486
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	30, 240, 277
FriOI	GRGCYC	2 cut(s)	51, 516
Fsp4HI	GCNGC	3 cut(s)	30, 240, 277
GlaI	GCGC	2 cut(s)	152, 188
GluI	GCNGC	3 cut(s)	30, 240, 277
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	66, 393
HgaI	GACGC	3 cut(s)	35, 282, 482
HhaI	GCGC	2 cut(s)	153, 189
Hin1I	GRCGYC	2 cut(s)	27, 204
Hin6I	GCGC	2 cut(s)	151, 187
HinP1I	GCGC	2 cut(s)	151, 187
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	72, 347, 389
HpaII	CCGG	2 cut(s)	66, 393
HphI	GGTGA	4 cut(s)	43, 190, 342, 407
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	40, 97, 217, 224, 305, 437
Hpy188III	TCNNGA	2 cut(s)	23, 497
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	7 cut(s)	44, 206, 209, 270, 276, 287, 450
HpyAV	CCTTC	2 cut(s)	135, 479
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	204, 475
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 175, 184, 245
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	204, 475
Hsp92I	GRCGYC	2 cut(s)	27, 204
HspAI	GCGC	2 cut(s)	151, 187
KflI	GGGWCCC	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	3, 97, 159, 172, 262
LmnI	GCTCC	2 cut(s)	98, 284
LpnPI	CCDG	3 cut(s)	79, 103, 406
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	2 cut(s)	204, 475
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	5 cut(s)	5, 99, 161, 174, 264
MboI	GATC	5 cut(s)	3, 97, 159, 172, 262
MboII	GAAGA	3 cut(s)	95, 393, 410
MhlI	GDGCHC	2 cut(s)	51, 516
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	63, 195, 328
MnlI	CCTC	5 cut(s)	187, 238, 369, 394, 444
MspI	CCGG	2 cut(s)	66, 393
MspR9I	CCNGG	2 cut(s)	66, 67
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	55, 175, 184, 245
NciI	CCSGG	2 cut(s)	66, 67
NdeII	GATC	5 cut(s)	3, 97, 159, 172, 262
NlaIV	GGNNCC	4 cut(s)	179, 280, 427, 428
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 198, 258
PfeI	GAWTC	2 cut(s)	72, 347
PkrI	GCNGC	3 cut(s)	31, 241, 278
Ple19I	CGATCG	2 cut(s)	175, 265
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	426
Psp124BI	GAGCTC	2 cut(s)	51, 516
Psp5II	RGGWCCY	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	179, 280, 427, 428
PspPI	GGNCC	2 cut(s)	177, 426
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	244
PvuI	CGATCG	2 cut(s)	175, 265
SacI	GAGCTC	2 cut(s)	51, 516
SalI	GTCGAC	1 cut(s)	284
SatI	GCNGC	3 cut(s)	30, 240, 277
Sau3AI	GATC	5 cut(s)	3, 97, 159, 172, 262
Sau96I	GGNCC	2 cut(s)	177, 426
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	66, 67
SduI	GDGCHC	2 cut(s)	51, 516
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	426
SmaI	CCCGGG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SsiI	CCGC	6 cut(s)	30, 129, 181, 276, 353, 522
SstI	GAGCTC	2 cut(s)	51, 516
StyD4I	CCNGG	2 cut(s)	64, 65
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	207, 478
TaqI	TCGA	8 cut(s)	75, 162, 171, 192, 252, 265, 285, 374
TaqII	GACCGA	1 cut(s)	270
TauI	GCSGC	2 cut(s)	32, 279
TfiI	GAWTC	2 cut(s)	72, 347
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	309, 498
TspGWI	ACGGA	2 cut(s)	271, 463
TspMI	CCCGGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	426
XmaI	CCCGGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.