Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Reverse (-)

24830105 .. 24830701

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTATTCCATTAGAGCTTTCTTCTCTTAGCTGTGGACTGAGAATCATACAAGCCAAAAACATAGAGTTCATCAAGACCACGGGAAACCTGTTCGTTAGATACTATCTTTCTGCAGGGGACAGCAAAAAAATTAGGCTGAACACTCGAGAAATCTCCACCAAGTCTGACCACATCTGGAACGAGTTCATTTCCTTGGAGTGTAATGGAAGCGACAGCTTTGTGCGAGAAACTGTGGTTTTTGAGCTCCGGTGGAGGAATACCGTGCCTGTTTTTGGAATAATTGGGGGATCACAACTACTGGGCAGGGCAGAGGTCCCATGGAAAGAAGTGCTCGAGTCACCAAACATGGAATTGGACAAGTGGGTCACGATGGTTCCAAGAAGTACTAGCGGCCGTGCTCTTGAAGGAGTCAAACCGCCTAAACTACAGGTATCGATCAAAGTTGGAGTCCAAGCAGAAGTGGGAATGGAGAAAAGGAGGCAGAGAAGGACGAAGAAGTGGGATGAGTGTGGTTGCGAAGATGGTCATGGTTATGGTTGCACATGTTCTGATTACGAAATTTTTGCACTAGCAGCTTTGCTAGAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

8.19

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AciI	CCGC	2 cut(s)	393, 419
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	5 cut(s)	19, 33, 219, 247, 578
AluI	AGCT	5 cut(s)	19, 33, 219, 247, 578
Alw21I	GWGCWC	3 cut(s)	249, 336, 403
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	147, 335
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
Asp700I	GAANNNNTTC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	2 cut(s)	147, 335
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	249, 336, 403
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	2 cut(s)	367, 518
BceAI	ACGGC	1 cut(s)	381
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BfaI	CTAG	3 cut(s)	390, 572, 584
BfmI	CTRYAG	2 cut(s)	114, 428
BisI	GCNGC	2 cut(s)	394, 576
BlsI	GCNGC	2 cut(s)	395, 577
BmcAI	AGTACT	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	147, 335
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	318, 378
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	81, 195, 320
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	81, 195, 320
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	306
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	437
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	3 cut(s)	249, 336, 403
BsiHKCI	CYCGRG	2 cut(s)	147, 335
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	134, 302
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	134, 302
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	2 cut(s)	147, 335
Bsp1286I	GDGCHC	3 cut(s)	249, 336, 403
Bsp143I	GATC	2 cut(s)	290, 438
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	393, 419
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	318, 378
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	81, 195, 320
BssMI	GATC	2 cut(s)	290, 438
BssT1I	CCWWGG	2 cut(s)	195, 320
Bst4CI	ACNGT	2 cut(s)	235, 265
BstDEI	CTNAG	2 cut(s)	29, 41
BstDSI	CCRYGG	2 cut(s)	81, 320
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	293, 441
BstMBI	GATC	2 cut(s)	290, 438
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	114, 428
BstV1I	GCAGC	1 cut(s)	587
BstZI	CGGCCG	1 cut(s)	394
Bsu15I	ATCGAT	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	437
BtgI	CCRYGG	2 cut(s)	81, 320
BtsCI	GGATG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	321, 349, 530, 546
CviJI	RGCY	9 cut(s)	19, 33, 56, 139, 219, 247, 396, 578, 590
CviKI_1	RGCY	9 cut(s)	19, 33, 56, 139, 219, 247, 396, 578, 590
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	29, 41
DpnI	GATC	2 cut(s)	292, 440
DpnII	GATC	2 cut(s)	290, 438
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	195, 320
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	2 cut(s)	147, 335
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	195, 320
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	195, 320
FaeI	CATG	4 cut(s)	324, 352, 533, 549
FaiI	YATR	7 cut(s)	50, 65, 322, 350, 531, 537, 547
FaqI	GGGAC	2 cut(s)	134, 302
FatI	CATG	4 cut(s)	320, 348, 529, 545
Fnu4HI	GCNGC	2 cut(s)	394, 576
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	394, 576
FspBI	CTAG	3 cut(s)	390, 572, 584
GluI	GCNGC	2 cut(s)	394, 576
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	4 cut(s)	324, 352, 533, 549
HinfI	GANTC	4 cut(s)	45, 338, 411, 450
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	169, 553
Hpy188III	TCNNGA	5 cut(s)	76, 149, 178, 370, 404
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	401, 483
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4V	TGCA	3 cut(s)	116, 543, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	2 cut(s)	29, 41
Hsp92II	CATG	4 cut(s)	324, 352, 533, 549
Kzo9I	GATC	2 cut(s)	290, 438
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	102, 104, 163, 263, 282, 287, 292, 416
Lsp1109I	GCAGC	1 cut(s)	587
MaeI	CTAG	3 cut(s)	390, 572, 584
MaeIII	GTNAC	2 cut(s)	339, 367
MalI	GATC	2 cut(s)	292, 440
MboI	GATC	2 cut(s)	290, 438
MboII	GAAGA	3 cut(s)	15, 508, 533
MhlI	GDGCHC	3 cut(s)	249, 336, 403
MluCI	AATT	4 cut(s)	132, 282, 353, 561
MlyI	GAGTC	3 cut(s)	347, 420, 459
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	249, 307, 474, 580
MroXI	GAANNNNTTC	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	290, 438
NlaIII	CATG	4 cut(s)	324, 352, 533, 549
NlaIV	GGNNCC	2 cut(s)	318, 378
NmuCI	GTSAC	2 cut(s)	339, 367
NspI	RCATGY	1 cut(s)	549
PaeR7I	CTCGAG	2 cut(s)	147, 335
PciI	ACATGT	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	395, 577
PleI	GAGTC	3 cut(s)	346, 419, 458
PpsI	GAGTC	3 cut(s)	346, 419, 458
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	318, 378
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	2 cut(s)	394, 576
Sau3AI	GATC	2 cut(s)	290, 438
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	3 cut(s)	347, 420, 459
SduI	GDGCHC	3 cut(s)	249, 336, 403
SetI	ASST	8 cut(s)	21, 35, 93, 221, 249, 318, 435, 580
SfcI	CTRYAG	2 cut(s)	114, 428
Sfr274I	CTCGAG	2 cut(s)	147, 335
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	2 cut(s)	147, 335
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	147, 335
SmoI	CTYRAG	2 cut(s)	147, 335
Sse9I	AATT	4 cut(s)	132, 282, 353, 561
SsiI	CCGC	2 cut(s)	393, 419
SspMI	CTAG	3 cut(s)	390, 572, 584
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	195, 320
TaaI	ACNGT	2 cut(s)	235, 265
TaqI	TCGA	3 cut(s)	148, 336, 437
TasI	AATT	4 cut(s)	132, 282, 353, 561
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	339, 367
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	339, 367
TspDTI	ATGAA	2 cut(s)	61, 178
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	549
XhoI	CTCGAG	2 cut(s)	147, 335
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	3 cut(s)	390, 572, 584
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.