Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Reverse (-)

42110638 .. 42113545

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAACAACCTCACTCTTCTCCTCCTCCTCACCTGTCACCTCTCCCCGAGTTCTCTCATGGAAAAAAAACCCGGCTCGAACTCCCTCACAGCCCAAGACGCCGCCATCTCCGACGGCGAGCTCACCGCCAAGCTCGTCCCCGAGAGAATCGAACAAGAAGAAACCAGCCCCGATCAAATCAAGCCCTTGCTTCTCACTCTCTCCGCTTACCAAGATGGGATCTTGCGCCTCGGGATCGACGACCTCGATCGGCCCCGCAAGCGCTTCAAGGTCCCCGACGTCGTTTTGCCGAGTTTCGGAACAAGAAGCTGCGGCTGCGAGGCTTTCGACCGAGACGATCGACGGCGACGCGGCTCTGTCGGCGATCGTGTTCTTATCCGATGGCTACGAGGCGGTGCTACGGCACAATCCGTTCGAGGTTTACGTACGCGAGAAGCGAGAGAGAAGGGAGAGGGTGAGGATTGGGAAGAGAGGTTTAGAGGGCACACGGATAGGAGGCCCTACGGCCCTCGGTCCATTAGTTTTGATGTGTCCTTTTATGGGGCTGATCGTGTTTATGGGATCCCTCGGGCATGCTTCAAGCTTTGCTTTGATACCACCAAAGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGATTAGAGGACCCAAGTGGGGTGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

242

Amino Acids

27.13

Weight (kDa)

7.55

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccII	CGCG	2 cut(s)	351, 430
AciI	CCGC	9 cut(s)	102, 126, 204, 256, 312, 351, 393, 626, 669
AclWI	GGATC	4 cut(s)	227, 242, 556, 569
AcyI	GRCGYC	2 cut(s)	99, 279
AfaI	GTAC	1 cut(s)	427
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	296, 540, 689
AgsI	TTSAA	2 cut(s)	268, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	4 cut(s)	121, 133, 309, 583
AluI	AGCT	4 cut(s)	121, 133, 309, 583
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	4 cut(s)	227, 242, 556, 569
Ama87I	CYCGRG	4 cut(s)	46, 140, 230, 567
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	3 cut(s)	251, 497, 505
ApeKI	GCWGC	3 cut(s)	309, 315, 666
AspLEI	GCGC	2 cut(s)	228, 264
AspS9I	GGNCC	6 cut(s)	252, 271, 498, 506, 513, 680
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	6 cut(s)	22, 29, 115, 467, 617, 647
AvaI	CYCGRG	4 cut(s)	46, 140, 230, 567
AvaII	GGWCC	3 cut(s)	271, 513, 680
BaeGI	GKGCMC	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	296, 302, 678
BccI	CCATC	4 cut(s)	113, 209, 375, 626
BceAI	ACGGC	4 cut(s)	130, 359, 417, 520
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	6 cut(s)	102, 310, 313, 316, 352, 667
BlsI	GCNGC	6 cut(s)	103, 311, 314, 317, 353, 668
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	3 cut(s)	271, 513, 680
BmeT110I	CYCGRG	4 cut(s)	46, 140, 230, 567
BmgT120I	GGNCC	6 cut(s)	252, 271, 498, 506, 513, 680
BmiI	GGNNCC	4 cut(s)	254, 273, 563, 682
BmrFI	CCNGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	425
BsaHI	GRCGYC	2 cut(s)	99, 279
BsaJI	CCNNGG	3 cut(s)	229, 509, 566
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 540, 689
BseDI	CCNNGG	3 cut(s)	229, 509, 566
BseLI	CCNNNNNNNGG	3 cut(s)	296, 540, 689
BseRI	GAGGAG	3 cut(s)	11, 14, 17
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	296, 302, 678
Bsh1236I	CGCG	2 cut(s)	351, 430
Bsh1285I	CGRYCG	4 cut(s)	250, 331, 340, 367
BshFI	GGCC	3 cut(s)	253, 499, 507
BsiEI	CGRYCG	4 cut(s)	250, 331, 340, 367
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	4 cut(s)	46, 140, 230, 567
BsiSI	CCGG	1 cut(s)	72
BsiWI	CGTACG	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	122, 257
BslI	CCNNNNNNNGG	3 cut(s)	296, 540, 689
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	122, 257
BsnI	GGCC	3 cut(s)	253, 499, 507
BsoBI	CYCGRG	4 cut(s)	46, 140, 230, 567
Bsp1286I	GDGCHC	2 cut(s)	123, 486
Bsp143I	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
BspACI	CCGC	9 cut(s)	102, 126, 204, 256, 312, 351, 393, 626, 669
BspANI	GGCC	3 cut(s)	253, 499, 507
BspFNI	CGCG	2 cut(s)	351, 430
BspLI	GGNNCC	4 cut(s)	254, 273, 563, 682
BspPI	GGATC	4 cut(s)	227, 242, 556, 569
BssECI	CCNNGG	3 cut(s)	229, 509, 566
BssMI	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
BssNI	GRCGYC	2 cut(s)	99, 279
BssSI	CACGAG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	724
Bst6I	CTCTTC	2 cut(s)	21, 462
BstACI	GRCGYC	2 cut(s)	99, 279
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	119, 260, 574
BstFNI	CGCG	2 cut(s)	351, 430
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	228, 264
BstKTI	GATC	9 cut(s)	175, 222, 237, 250, 340, 367, 550, 564, 610
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
BstMCI	CGRYCG	4 cut(s)	250, 331, 340, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 259, 315, 360
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	486
BstSNI	TACGTA	1 cut(s)	425
BstUI	CGCG	2 cut(s)	351, 430
BstV1I	GCAGC	3 cut(s)	296, 302, 678
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	2 cut(s)	219, 561
BstYI	RGATCY	2 cut(s)	219, 561
BsuRI	GGCC	3 cut(s)	253, 499, 507
Cac8I	GCNNGC	3 cut(s)	119, 260, 574
CfoI	GCGC	2 cut(s)	228, 264
Cfr13I	GGNCC	6 cut(s)	252, 271, 498, 506, 513, 680
CseI	GACGC	3 cut(s)	107, 357, 672
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	2 cut(s)	58, 573
CviQI	GTAC	1 cut(s)	426
DpnI	GATC	9 cut(s)	174, 221, 236, 249, 339, 366, 549, 563, 609
DpnII	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
Eam1104I	CTCTTC	2 cut(s)	21, 462
EarI	CTCTTC	2 cut(s)	21, 462
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	121
Eco105I	TACGTA	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	3 cut(s)	271, 513, 680
Eco47III	AGCGCT	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	121
Eco88I	CYCGRG	4 cut(s)	46, 140, 230, 567
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	3 cut(s)	271, 498, 680
EcoT38I	GRGCYC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	2 cut(s)	61, 576
FaiI	YATR	4 cut(s)	59, 540, 558, 574
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	2 cut(s)	122, 257
FatI	CATG	2 cut(s)	57, 572
FauI	CCCGC	2 cut(s)	263, 662
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	6 cut(s)	102, 310, 313, 316, 352, 667
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	6 cut(s)	102, 310, 313, 316, 352, 667
GlaI	GCGC	2 cut(s)	227, 263
GluI	GCNGC	6 cut(s)	102, 310, 313, 316, 352, 667
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	253, 499, 507
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	3 cut(s)	107, 357, 672
HhaI	GCGC	2 cut(s)	228, 264
Hin1I	GRCGYC	2 cut(s)	99, 279
Hin1II	CATG	2 cut(s)	61, 576
Hin6I	GCGC	2 cut(s)	226, 262
HinP1I	GCGC	2 cut(s)	226, 262
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	147, 638
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	6 cut(s)	22, 29, 115, 467, 617, 647
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	112, 299, 380
Hpy188III	TCNNGA	2 cut(s)	232, 726
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	6 cut(s)	116, 242, 281, 284, 345, 351
HpyAV	CCTTC	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	279, 424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 259, 315, 360
HpySE526I	ACGT	2 cut(s)	279, 424
Hsp92I	GRCGYC	2 cut(s)	99, 279
Hsp92II	CATG	2 cut(s)	61, 576
HspAI	GCGC	2 cut(s)	226, 262
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
LpnPI	CCDG	3 cut(s)	46, 85, 178
Lsp1109I	GCAGC	3 cut(s)	296, 302, 678
MaeII	ACGT	2 cut(s)	279, 424
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	9 cut(s)	174, 221, 236, 249, 339, 366, 549, 563, 609
MboI	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
MboII	GAAGA	4 cut(s)	8, 170, 479, 672
MflI	RGATCY	2 cut(s)	219, 561
MhlI	GDGCHC	2 cut(s)	123, 486
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	669
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	72
MvnI	CGCG	2 cut(s)	351, 430
MwoI	GCNNNNNNNGC	4 cut(s)	98, 259, 315, 360
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
NlaIII	CATG	2 cut(s)	61, 576
NlaIV	GGNNCC	4 cut(s)	254, 273, 563, 682
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	5 cut(s)	237, 243, 333, 421, 434
PfeI	GAWTC	2 cut(s)	147, 638
Pfl23II	CGTACG	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	103, 311, 314, 317, 353, 668
Ple19I	CGATCG	3 cut(s)	250, 340, 367
Ppu21I	YACGTR	1 cut(s)	425
PpuMI	RGGWCCY	2 cut(s)	271, 680
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	2 cut(s)	271, 680
PspLI	CGTACG	1 cut(s)	425
PspN4I	GGNNCC	4 cut(s)	254, 273, 563, 682
PspPI	GGNCC	6 cut(s)	252, 271, 498, 506, 513, 680
PspPPI	RGGWCCY	2 cut(s)	271, 680
PsuI	RGATCY	2 cut(s)	219, 561
PvuI	CGATCG	3 cut(s)	250, 340, 367
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	6 cut(s)	102, 310, 313, 316, 352, 667
Sau3AI	GATC	9 cut(s)	172, 219, 234, 247, 337, 364, 547, 561, 607
Sau96I	GGNCC	6 cut(s)	252, 271, 498, 506, 513, 680
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	123, 486
SinI	GGWCC	3 cut(s)	271, 513, 680
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	1 cut(s)	576
SsiI	CCGC	9 cut(s)	102, 126, 204, 256, 312, 351, 393, 626, 669
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	70
TaiI	ACGT	2 cut(s)	282, 427
TaqI	TCGA	7 cut(s)	77, 150, 237, 246, 327, 340, 415
TaqII	GACCGA	2 cut(s)	345, 501
TauI	GCSGC	3 cut(s)	104, 315, 354
TfiI	GAWTC	2 cut(s)	147, 638
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	309, 315, 666
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	400, 503
VpaK11BI	GGWCC	3 cut(s)	271, 513, 680
XceI	RCATGY	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.