Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026486.1

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1487

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 487 bp

taagacccataagctggacgttaacgaagagggtgttcctgctttccagagggctgggactatcataccacggaaagaccggtttcgtcggagttccacccagatggtgaacgatccatacactctggtgatagcactgaatagttcacaagccgctgaaggtgaactctatgtggatgatggaaaaagcttcgagtttcagcaaggatcctatatccatcggcgctttgttttcgcagatgggaagcttacatctcttaatctggcatctggacaaacccaattttcttcagaatgtgttattgagaggattattctgcaaggactgtctactgggcaaaagagtgcgctaattgaaccggcaaatcaaaagactgagattgaacagggcccgcttctccttcattcaaggcaaggatcaacagtgttaacgattcgtaagcctaatgttcgaatagcagatgattgggtcataaaaatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

8.78

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	2 cut(s)	154, 393
AclWI	GGATC	4 cut(s)	108, 202, 215, 425
AcuI	CTGAAG	2 cut(s)	178, 274
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	357, 384, 409
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	14, 190, 248
AluI	AGCT	3 cut(s)	14, 190, 248
AlwI	GGATC	4 cut(s)	108, 202, 215, 425
AoxI	GGCC	1 cut(s)	389
ApaI	GGGCCC	1 cut(s)	393
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	226, 350
AspS9I	GGNCC	2 cut(s)	389, 390
AsuHPI	GGTGA	3 cut(s)	119, 140, 174
AsuII	TTCGAA	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	393
BccI	CCATC	4 cut(s)	98, 174, 226, 234
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	389, 390
BmiI	GGNNCC	2 cut(s)	209, 391
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	2 cut(s)	79, 359
Bse1I	ACTGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	393
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	80, 360
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	452
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	113, 207, 417
BspACI	CCGC	2 cut(s)	154, 393
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	209, 391
BspPI	GGATC	4 cut(s)	108, 202, 215, 425
BspT104I	TTCGAA	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	79, 359
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	2 cut(s)	79, 359
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	113, 207, 417
Bst4CI	ACNGT	2 cut(s)	328, 425
Bst6I	CTCTTC	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 350
BstKTI	GATC	3 cut(s)	116, 210, 420
BstMBI	GATC	3 cut(s)	113, 207, 417
BstSLI	GKGCMC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	207
BstXI	CCANNNNNNTGG	2 cut(s)	54, 104
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	135, 430
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	226, 350
Cfr10I	RCCGGY	2 cut(s)	79, 359
Cfr13I	GGNCC	2 cut(s)	389, 390
CspAI	ACCGGT	1 cut(s)	79
CviJI	RGCY	7 cut(s)	14, 54, 153, 190, 248, 391, 443
CviKI_1	RGCY	7 cut(s)	14, 54, 153, 190, 248, 391, 443
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	3 cut(s)	115, 209, 419
DpnII	GATC	3 cut(s)	113, 207, 417
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	178, 274
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	393
FaiI	YATR	6 cut(s)	10, 66, 119, 172, 214, 474
FaqI	GGGAC	1 cut(s)	71
FauI	CCCGC	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	154
GlaI	GCGC	2 cut(s)	225, 349
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	2 cut(s)	80, 360
HhaI	GCGC	2 cut(s)	226, 350
Hin6I	GCGC	2 cut(s)	224, 348
HinP1I	GCGC	2 cut(s)	224, 348
HincII	GTYRAC	2 cut(s)	23, 430
HindII	GTYRAC	2 cut(s)	23, 430
HindIII	AAGCTT	2 cut(s)	188, 246
HinfI	GANTC	1 cut(s)	434
HpaI	GTTAAC	2 cut(s)	23, 430
HpaII	CCGG	2 cut(s)	80, 360
HphI	GGTGA	3 cut(s)	119, 140, 174
Hpy166II	GTNNAC	6 cut(s)	23, 110, 147, 165, 331, 430
Hpy188I	TCNGA	2 cut(s)	91, 293
Hpy188III	TCNNGA	2 cut(s)	47, 271
Hpy8I	GTNNAC	6 cut(s)	23, 110, 147, 165, 331, 430
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	153, 411
HpyCH4III	ACNGT	2 cut(s)	328, 425
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	2 cut(s)	224, 348
KspAI	GTTAAC	2 cut(s)	23, 430
Kzo9I	GATC	3 cut(s)	113, 207, 417
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	19
MalI	GATC	3 cut(s)	115, 209, 419
MboI	GATC	3 cut(s)	113, 207, 417
MboII	GAAGA	2 cut(s)	39, 280
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	2 cut(s)	282, 352
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	23, 43, 301
MseI	TTAA	3 cut(s)	22, 259, 429
MslI	CAYNNNNRTG	2 cut(s)	102, 126
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	80, 360
NdeII	GATC	3 cut(s)	113, 207, 417
NlaIV	GGNNCC	2 cut(s)	209, 391
NspV	TTCGAA	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	209, 391
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	2 cut(s)	389, 390
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
PsuI	RGATCY	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	102, 126
SaqAI	TTAA	3 cut(s)	22, 259, 429
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	113, 207, 417
Sau96I	GGNCC	2 cut(s)	389, 390
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	5 cut(s)	16, 22, 164, 192, 250
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	102, 126
Sse9I	AATT	2 cut(s)	282, 352
SsiI	CCGC	2 cut(s)	154, 393
SspI	AATATT	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	328, 425
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	193, 452
TasI	AATT	2 cut(s)	282, 352
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	22, 259, 429
Tru9I	TTAA	3 cut(s)	22, 259, 429
TscAI	CASTG	2 cut(s)	142, 430
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	142, 430
Van91I	CCANNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.