Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Forward (+)

58027262 .. 58032523

Gene Structure 5262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAAGTATCGCAGCTAGCAATCGTGAAACCTATTATGCACCAAGATGCACGGCATAGCTTGGTGTCAAAGTCTTTGTCTACTTGTTCTGCATCATCGACCAATGGAAATATTCCAAAGGAACGAGCTCACCAAGCTTGTCCCCGGAGAATCGAACAAGAAGAAACCAGCTCCGATCAAGTCAAGCCTTTGCTTCTCACTCCTTCCGCTTACCCGGACGAAATCTTGCTCCTTAGGATCGACAAGCTCGATCGGCCCCGCAAGTGCTTCGAGGTCACCGACGTCGTGTTGCGGAGTTGCGAACAAGAAGCTCGGCTGCAGAGGCTTTCGACCGAGACGATCGACGGCGACGCGGCTTCGTCGACGATCGTGTTCTTATTAGACAAGCGAAGCAGTTCATCGGGAGATTTTGTGGTGGAATGGGATTCACCACGGTCCACGATGTGGTTTCGAGGAGAAGATTGGAGTACGGTGAAGAAGTTGTCGTTTCGGCTATGTTGGGTCCCTTTTTCCGAATACCACCGACGAGAGGAGTATTTGTATCCAAGGGATGTTGTGATGAAGGTATGCGTGAAGAAGCCTGGGTTGAGCTCTATACTGCAGTTTGACTGTGAGTTATATGAGCCGACGGTATTGGTTCTTCGTTTGCAATGCGGGAATTCTATTATATTCGGTCACCCTCAAATTGGCCCTTTCGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

234

Amino Acids

26.66

Weight (kDa)

7.57

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	2 cut(s)	80, 362
AccII	CGCG	1 cut(s)	353
AciI	CCGC	5 cut(s)	207, 259, 292, 353, 654
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	444, 529, 686
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	8 cut(s)	16, 60, 128, 137, 171, 247, 311, 591
AluI	AGCT	8 cut(s)	16, 60, 128, 137, 171, 247, 311, 591
Alw21I	GWGCWC	2 cut(s)	130, 593
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	254, 688
ApeKI	GCWGC	2 cut(s)	13, 316
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	4 cut(s)	255, 435, 502, 689
AsuC2I	CCSGG	2 cut(s)	145, 215
AsuHPI	GGTGA	5 cut(s)	122, 268, 420, 484, 668
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	435, 502
AxyI	CCTNAGG	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	130, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	624, 656
Bbv12I	GWGCWC	2 cut(s)	130, 593
BbvI	GCAGC	2 cut(s)	25, 303
BceAI	ACGGC	2 cut(s)	68, 361
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	145, 215
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	317, 599
BfuI	GTATCC	1 cut(s)	552
BisI	GCNGC	3 cut(s)	14, 317, 354
BlsI	GCNGC	3 cut(s)	15, 318, 355
Bme1390I	CCNGG	3 cut(s)	145, 215, 582
Bme18I	GGWCC	2 cut(s)	435, 502
BmgT120I	GGNCC	4 cut(s)	255, 435, 502, 689
BmiI	GGNNCC	3 cut(s)	257, 503, 504
BmrFI	CCNGG	3 cut(s)	145, 215, 582
BmsI	GCATC	2 cut(s)	37, 101
BmtI	GCTAGC	1 cut(s)	20
BpuMI	CCSGG	2 cut(s)	145, 215
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	143, 431, 545, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	444, 529, 686
Bse21I	CCTNAGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	143, 431, 545, 581
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	3 cut(s)	444, 529, 686
BseMI	GCAATG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	468, 545
BseXI	GCAGC	2 cut(s)	25, 303
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	4 cut(s)	253, 333, 342, 369
BshFI	GGCC	2 cut(s)	256, 690
BsiEI	CGRYCG	4 cut(s)	253, 333, 342, 369
BsiHKAI	GWGCWC	2 cut(s)	130, 593
BsiSI	CCGG	2 cut(s)	145, 215
BslFI	GGGAC	2 cut(s)	126, 488
BslI	CCNNNNNNNGG	3 cut(s)	444, 529, 686
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	126, 488
BsnI	GGCC	2 cut(s)	256, 690
Bsp1286I	GDGCHC	2 cut(s)	130, 593
Bsp143I	GATC	5 cut(s)	175, 237, 250, 339, 366
BspACI	CCGC	5 cut(s)	207, 259, 292, 353, 654
BspANI	GGCC	2 cut(s)	256, 690
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	257, 503, 504
BspMAI	CTGCAG	2 cut(s)	321, 603
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	656
BssECI	CCNNGG	4 cut(s)	143, 431, 545, 581
BssMI	GATC	5 cut(s)	175, 237, 250, 339, 366
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	4 cut(s)	435, 472, 611, 631
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	431
BstEII	GGTNACC	2 cut(s)	274, 674
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	5 cut(s)	178, 240, 253, 342, 369
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	175, 237, 250, 339, 366
BstMCI	CGRYCG	4 cut(s)	253, 333, 342, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 253, 322
BstNI	CCWGG	1 cut(s)	582
BstPI	GGTNACC	2 cut(s)	274, 674
BstSCI	CCNGG	3 cut(s)	143, 213, 580
BstSFI	CTRYAG	2 cut(s)	317, 599
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	25, 303
Bsu36I	CCTNAGG	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	256, 690
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	4 cut(s)	255, 435, 502, 689
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	468
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	5 cut(s)	177, 239, 252, 341, 368
DpnII	GATC	5 cut(s)	175, 237, 250, 339, 366
DraIII	CACNNNGTG	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	128, 591
Eco130I	CCWWGG	1 cut(s)	545
Eco24I	GRGCYC	2 cut(s)	130, 593
Eco47I	GGWCC	2 cut(s)	435, 502
Eco53kI	GAGCTC	2 cut(s)	128, 591
Eco81I	CCTNAGG	1 cut(s)	233
Eco91I	GGTNACC	2 cut(s)	274, 674
EcoICRI	GAGCTC	2 cut(s)	128, 591
EcoO109I	RGGNCCY	1 cut(s)	502
EcoO65I	GGTNACC	2 cut(s)	274, 674
EcoRI	GAATTC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	130, 593
ErhI	CCWWGG	1 cut(s)	545
Esp3I	CGTCTC	1 cut(s)	329
FaiI	YATR	9 cut(s)	38, 57, 496, 568, 596, 619, 621, 668, 703
FaqI	GGGAC	2 cut(s)	126, 488
FauI	CCCGC	2 cut(s)	266, 647
FblI	GTMKAC	2 cut(s)	80, 362
Fnu4HI	GCNGC	3 cut(s)	14, 317, 354
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	2 cut(s)	130, 593
Fsp4HI	GCNGC	3 cut(s)	14, 317, 354
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	14, 317, 354
HaeIII	GGCC	2 cut(s)	256, 690
HapII	CCGG	2 cut(s)	145, 215
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	150, 425
HpaII	CCGG	2 cut(s)	145, 215
HphI	GGTGA	5 cut(s)	122, 268, 420, 484, 668
Hpy166II	GTNNAC	3 cut(s)	81, 363, 438
Hpy188I	TCNGA	2 cut(s)	175, 514
Hpy188III	TCNNGA	2 cut(s)	25, 402
Hpy8I	GTNNAC	3 cut(s)	81, 363, 438
Hpy99I	CGWCG	8 cut(s)	284, 287, 347, 353, 364, 367, 528, 631
HpyAV	CCTTC	2 cut(s)	213, 556
HpyCH4III	ACNGT	4 cut(s)	435, 472, 611, 631
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	6 cut(s)	40, 50, 92, 319, 601, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 253, 322
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	282
KflI	GGGWCCC	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	175, 237, 250, 339, 366
LmnI	GCTCC	2 cut(s)	176, 234
LpnPI	CCDG	5 cut(s)	158, 181, 228, 567, 594
Lsp1109I	GCAGC	2 cut(s)	25, 303
LweI	GCATC	2 cut(s)	37, 101
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	274, 674
MalI	GATC	5 cut(s)	177, 239, 252, 341, 368
MboI	GATC	5 cut(s)	175, 237, 250, 339, 366
MboII	GAAGA	5 cut(s)	173, 470, 487, 586, 632
MhlI	GDGCHC	2 cut(s)	130, 593
MluCI	AATT	2 cut(s)	658, 684
MnlI	CCTC	5 cut(s)	265, 315, 446, 523, 690
MroXI	GAANNNNTTC	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	2 cut(s)	145, 215
MspR9I	CCNGG	3 cut(s)	145, 215, 582
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	134, 253, 322
NciI	CCSGG	2 cut(s)	145, 215
NdeII	GATC	5 cut(s)	175, 237, 250, 339, 366
NheI	GCTAGC	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	257, 503, 504
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	274, 674
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 276, 335
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	150, 425
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	15, 318, 355
Ple19I	CGATCG	3 cut(s)	253, 342, 369
PpuMI	RGGWCCY	1 cut(s)	502
Psp124BI	GAGCTC	2 cut(s)	130, 593
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	580
PspEI	GGTNACC	2 cut(s)	274, 674
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	257, 503, 504
PspPI	GGNCC	4 cut(s)	255, 435, 502, 689
PspPPI	RGGWCCY	1 cut(s)	502
PstI	CTGCAG	2 cut(s)	321, 603
PvuI	CGATCG	3 cut(s)	253, 342, 369
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	2 cut(s)	130, 593
SalI	GTCGAC	1 cut(s)	361
SatI	GCNGC	3 cut(s)	14, 317, 354
Sau3AI	GATC	5 cut(s)	175, 237, 250, 339, 366
Sau96I	GGNCC	4 cut(s)	255, 435, 502, 689
ScrFI	CCNGG	3 cut(s)	145, 215, 582
SduI	GDGCHC	2 cut(s)	130, 593
SfaNI	GCATC	2 cut(s)	37, 101
SfcI	CTRYAG	2 cut(s)	317, 599
SgrDI	CGTCGACG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	435, 502
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	658, 684
SsiI	CCGC	5 cut(s)	207, 259, 292, 353, 654
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	2 cut(s)	130, 593
StyD4I	CCNGG	3 cut(s)	143, 213, 580
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	4 cut(s)	435, 472, 611, 631
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	9 cut(s)	98, 153, 240, 249, 270, 329, 342, 362, 451
TaqII	GACCGA	3 cut(s)	347, 662, 686
TasI	AATT	2 cut(s)	658, 684
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	150, 425
TseFI	GTSAC	2 cut(s)	274, 674
TseI	GCWGC	2 cut(s)	13, 316
Tsp45I	GTSAC	2 cut(s)	274, 674
TspDTI	ATGAA	3 cut(s)	17, 387, 575
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	435, 502
XapI	RAATTY	1 cut(s)	658
XmiI	GTMKAC	2 cut(s)	80, 362
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.