Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Forward (+)

42764492 .. 42767918

Gene Structure 3427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGATAGTGGGACTTACGGGTGGGGTTTCATCTGGGAAGAAAAACAAAAACCACATTTCCTTCTTTCCTCCCCTTCGGCCCAGCTCCCATCGATCCTCTCTTTCGCACATCCTCGCAGAGCGAGAGGAGATGTTGACTTTACGCACCCGGTTCGAACTTCCTCACAGCCAAGACGCTGCCATCTTTGACGGCGAGCTCACCACCAAGCTCGTCCCCAAGAGTAACGAACATGAAGAAACCAGCCCCGATCAAATCAAGCCCTTGCTTCTCACACTCTCCGCTCACCAAGACGGATCCGGCGCCTTAGGAACGACAAACTCGATCGGCCCGCAAGCACTTCGAAGTCACCAACGTTGTTTTGCCGGAGTTCCGAACAAGAAGACTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

9.8

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	284
AciI	CCGC	2 cut(s)	282, 332
AclI	AACGTT	1 cut(s)	355
AclWI	GGATC	3 cut(s)	90, 291, 304
AcyI	GRCGYC	1 cut(s)	303
AluBI	AGCT	3 cut(s)	87, 199, 211
AluI	AGCT	3 cut(s)	87, 199, 211
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	90, 291, 304
AoxI	GGCC	2 cut(s)	80, 328
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	81, 329
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	193, 278, 341
AsuII	TTCGAA	2 cut(s)	156, 343
AxyI	CCTNAGG	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	99, 191
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 323, 357
BcnI	CCSGG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	81, 329
BmiI	GGNNCC	2 cut(s)	298, 304
BmrFI	CCNGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	389
Bpu14I	TTCGAA	2 cut(s)	156, 343
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	303
Bse21I	CCTNAGG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	94
BseGI	GGATG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	82, 330
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	151, 300, 366
BslFI	GGGAC	2 cut(s)	27, 200
BsmFI	GGGAC	2 cut(s)	27, 200
BsnI	GGCC	2 cut(s)	82, 330
Bsp119I	TTCGAA	2 cut(s)	156, 343
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	95, 250, 296, 324
BspACI	CCGC	2 cut(s)	282, 332
BspANI	GGCC	2 cut(s)	82, 330
BspDI	ATCGAT	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	298, 304
BspPI	GGATC	3 cut(s)	90, 291, 304
BspT104I	TTCGAA	2 cut(s)	156, 343
BspT107I	GGYRCC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	284
BssMI	GATC	4 cut(s)	95, 250, 296, 324
BssNI	GRCGYC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	303
BstBI	TTCGAA	2 cut(s)	156, 343
BstC8I	GCNNGC	3 cut(s)	197, 332, 336
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	4 cut(s)	98, 253, 299, 327
BstMBI	GATC	4 cut(s)	95, 250, 296, 324
BstMCI	CGRYCG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	82, 330
BsuTUI	ATCGAT	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	197, 332, 336
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	81, 329
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	8 cut(s)	82, 87, 171, 199, 211, 246, 262, 330
CviKI_1	RGCY	8 cut(s)	82, 87, 171, 199, 211, 246, 262, 330
DdeI	CTNAG	1 cut(s)	307
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	4 cut(s)	97, 252, 298, 326
DpnII	GATC	4 cut(s)	95, 250, 296, 324
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
FaeI	CATG	1 cut(s)	236
FaiI	YATR	1 cut(s)	234
FaqI	GGGAC	2 cut(s)	27, 200
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	82, 330
HapII	CCGG	3 cut(s)	151, 300, 366
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	151, 300, 366
HphI	GGTGA	3 cut(s)	193, 278, 341
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	73, 86
HpyCH4IV	ACGT	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	303
KasI	GGCGCC	1 cut(s)	302
Kzo9I	GATC	4 cut(s)	95, 250, 296, 324
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	21, 97, 164, 256, 313, 379
Lsp1109I	GCAGC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	224, 347
MalI	GATC	4 cut(s)	97, 252, 298, 326
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	4 cut(s)	95, 250, 296, 324
MboII	GAAGA	2 cut(s)	52, 248
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	5 cut(s)	81, 109, 121, 125, 174
MspI	CCGG	3 cut(s)	151, 300, 366
MspR9I	CCNGG	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	95, 250, 296, 324
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	298, 304
NmuCI	GTSAC	1 cut(s)	347
NspV	TTCGAA	2 cut(s)	156, 343
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	181
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	379
PluTI	GGCGCC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	298, 304
PspPI	GGNCC	2 cut(s)	81, 329
PsuI	RGATCY	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	95, 250, 296, 324
Sau96I	GGNCC	2 cut(s)	81, 329
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	4 cut(s)	89, 201, 213, 358
SfoI	GGCGCC	1 cut(s)	304
SfuI	TTCGAA	2 cut(s)	156, 343
SsiI	CCGC	2 cut(s)	282, 332
SspDI	GGCGCC	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	4 cut(s)	94, 156, 323, 343
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	21, 249
TspGWI	ACGGA	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.