Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

5821356 .. 5822694

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1071700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAGCAAAAGCAAGGAACCCCAGAAAGACCCGGAACCCAAATCTCGTCCGCGGGGTGGGTAAGTTCTCGAGGTCCAAAATGTACCACAAGCGTGGTCTTTGGGCTCTCAAAGCCAAAAATGGCGGCGTCTTCCCTCGCCACGATGCGAAGCCGGCAGCCGAGACCCAGCCTGAGAAGCCGCCCAAGTTCTACCCCGCCGACGACGTCAAGAAACCCCTCGTCAACAAACGCAAGCCCAGGCCCACGAAGCTCAGGGCTAGTATTACACCAGGGACGGTGCTGATTGTATTGGCTGGAAGGTTTAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTTCATCTGGGCTACTTCTTGTTACTAATGAGTATTGCCCCTTTAAAATTAATGGTGTTCCTTTGAGACGTGTAAATCAGTCTTACGTGATTGCCACTTCTATCGATAAGTTTGATGACAAATATTTTGCTAAGGAAGTTGCAAAGAAGAAGGGAGAAGGAGAATTTTTTGAGGCTGAGAAAGAGGTTAGAATTATTGTTCTTCATTTACATATACTTTTGAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

189

Amino Acids

21.29

Weight (kDa)

10.52

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 56	1.9e-15	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	129 - 174	2.4e-08	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	54
AciI	CCGC	5 cut(s)	52, 54, 126, 182, 198
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	2 cut(s)	129, 207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	239, 271
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	253, 337
AluI	AGCT	2 cut(s)	253, 337
Alw26I	GTCTC	2 cut(s)	158, 397
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	5, 158, 334
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AseI	ATTAAT	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	75, 243
AsuC2I	CCSGG	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	17, 170, 346
BciT130I	CCWGG	2 cut(s)	241, 273
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	158, 397
BfaI	CTAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	5 cut(s)	6, 127, 159, 182, 335
BlsI	GCNGC	5 cut(s)	7, 128, 160, 183, 336
Bme1390I	CCNGG	3 cut(s)	34, 241, 273
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	75, 243
BmiI	GGNNCC	2 cut(s)	20, 38
BmrFI	CCNGG	3 cut(s)	34, 241, 273
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	124
Bpu10I	CCTNAGC	2 cut(s)	254, 468
BpuMI	CCSGG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	424
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	52, 239, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	241, 273
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	52, 239, 272
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	165, 268, 504
BseXI	GCAGC	3 cut(s)	17, 170, 346
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	34, 155
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	158, 397
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	5 cut(s)	52, 54, 126, 182, 198
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	3 cut(s)	166, 267, 505
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	20, 38
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	52, 239, 272
BssNI	GRCGYC	2 cut(s)	129, 207
Bst2UI	CCWGG	2 cut(s)	241, 273
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	2 cut(s)	129, 207
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	156, 236
BstDEI	CTNAG	4 cut(s)	174, 254, 468, 513
BstDSI	CCRYGG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	158, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
BstNI	CCWGG	2 cut(s)	241, 273
BstSCI	CCNGG	3 cut(s)	32, 239, 271
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	17, 170, 346
BstV2I	GAAGAC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	156, 236
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	75, 243
Cfr42I	CCGCGG	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	85
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	174, 254, 468, 513
DraI	TTTAAA	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	239, 271
EcoT38I	GRGCYC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	397
FaiI	YATR	2 cut(s)	549, 551
FaqI	GGGAC	1 cut(s)	289
FauI	CCCGC	2 cut(s)	47, 205
Fnu4HI	GCNGC	5 cut(s)	6, 127, 159, 182, 335
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	5 cut(s)	6, 127, 159, 182, 335
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	5 cut(s)	6, 127, 159, 182, 335
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	2 cut(s)	34, 155
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	129, 207
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	34, 155
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	70, 211
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	3 cut(s)	294, 481, 488
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	3 cut(s)	207, 406, 423
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
HpyF3I	CTNAG	4 cut(s)	174, 254, 468, 513
HpySE526I	ACGT	3 cut(s)	207, 406, 423
Hsp92I	GRCGYC	2 cut(s)	129, 207
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	55
Lsp1109I	GCAGC	3 cut(s)	17, 170, 346
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	207, 406, 423
MaeIII	GTNAC	1 cut(s)	358
MboII	GAAGA	3 cut(s)	124, 496, 530
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	384, 500, 528
MnlI	CCTC	5 cut(s)	66, 147, 230, 502, 514
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	4 cut(s)	306, 330, 381, 387
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	34, 155
MspR9I	CCNGG	3 cut(s)	34, 241, 273
MvaI	CCWGG	2 cut(s)	241, 273
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	154
NlaIV	GGNNCC	2 cut(s)	20, 38
NmeAIII	GCCGAG	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	7, 128, 160, 183, 336
Ppu21I	YACGTR	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	239, 271
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	2 cut(s)	239, 271
PspN4I	GGNNCC	2 cut(s)	20, 38
PspPI	GGNCC	2 cut(s)	75, 243
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	306, 330, 381, 387
SatI	GCNGC	5 cut(s)	6, 127, 159, 182, 335
Sau96I	GGNCC	2 cut(s)	75, 243
ScrFI	CCNGG	3 cut(s)	34, 241, 273
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	8 cut(s)	77, 210, 255, 305, 339, 409, 426, 525
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	70, 329
SmoI	CTYRAG	2 cut(s)	70, 329
Sse9I	AATT	3 cut(s)	384, 500, 528
SsiI	CCGC	5 cut(s)	52, 54, 126, 182, 198
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	32, 239, 271
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	3 cut(s)	210, 409, 426
TaqI	TCGA	2 cut(s)	71, 441
TasI	AATT	3 cut(s)	384, 500, 528
TauI	GCSGC	2 cut(s)	129, 184
Tru1I	TTAA	4 cut(s)	306, 330, 381, 387
Tru9I	TTAA	4 cut(s)	306, 330, 381, 387
TseI	GCWGC	3 cut(s)	5, 158, 334
TspDTI	ATGAA	2 cut(s)	330, 530
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.