Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

3765276 .. 3766341

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTACTAAATGTTGTATCTTATCTATTTTTCTTGGAGATACGGAACCCAGATCTCGTCCGCCGGGTGGGTAAGTTCTCGAGGTCCAAAATGTACCACAAGCGTGGTCTTTGGGCTCTCAAGGCCAAAAACGGCGGCGTATTCCCTCGCCACGATGCGAAGCCGGCATCCGAGACCCAGCCTGAGAAGCCGCCCAAGTTCTACCCAGCCGACGATGTCAAGAAACCCCTCGCCAACAAACGCAAGCCCAGGCCCACCAAGCTCAGGGCTAGTATTACATCAGGGACGGTGCTGATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

10.74

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	61, 135, 191
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	67, 264
AjnI	CCWGG	1 cut(s)	248
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	123, 251
AspS9I	GGNCC	2 cut(s)	84, 252
AsuC2I	CCSGG	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	136, 191
BlsI	GCNGC	2 cut(s)	137, 192
Bme1390I	CCNGG	2 cut(s)	65, 250
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	84, 252
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	65, 250
BmsI	GCATC	2 cut(s)	145, 176
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 264
Bse118I	RCCGGY	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	67, 264
BseMII	CTCAG	2 cut(s)	174, 277
BseYI	CCCAGC	2 cut(s)	177, 205
BshFI	GGCC	2 cut(s)	125, 253
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	64, 164
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	67, 264
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	125, 253
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	61, 135, 191
BspANI	GGCC	2 cut(s)	125, 253
BspCNI	CTCAG	2 cut(s)	175, 276
BspLI	GGNNCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	165, 245
BstDEI	CTNAG	2 cut(s)	183, 263
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 164, 187, 259
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	63, 248
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	125, 253
BtsCI	GGATG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	165, 245
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	84, 252
Csp6I	GTAC	1 cut(s)	94
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	183, 263
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	118
FaiI	YATR	1 cut(s)	301
FaqI	GGGAC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	136, 191
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	136, 191
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	136, 191
GsaI	CCCAGC	2 cut(s)	181, 209
HaeIII	GGCC	2 cut(s)	125, 253
HapII	CCGG	2 cut(s)	64, 164
HpaII	CCGG	2 cut(s)	64, 164
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	79, 220
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 164, 187, 259
HpyF3I	CTNAG	2 cut(s)	183, 263
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	52
LweI	GCATC	2 cut(s)	145, 176
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	75, 156, 239
MroNI	GCCGGC	1 cut(s)	163
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	2 cut(s)	64, 164
MspR9I	CCNGG	2 cut(s)	65, 250
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	122, 164, 187, 259
NaeI	GCCGGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	79
PdiI	GCCGGC	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	137, 192
Psp6I	CCWGG	1 cut(s)	248
PspFI	CCCAGC	2 cut(s)	177, 205
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	84, 252
PsuI	RGATCY	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	2 cut(s)	136, 191
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	84, 252
ScrFI	CCNGG	2 cut(s)	65, 250
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	2 cut(s)	86, 264
SfaNI	GCATC	2 cut(s)	145, 176
Sfr274I	CTCGAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	79, 119
SmoI	CTYRAG	2 cut(s)	79, 119
SsiI	CCGC	3 cut(s)	61, 135, 191
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	63, 248
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	80
TauI	GCSGC	2 cut(s)	138, 193
TspGWI	ACGGA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	79
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.