MD10G1116300.v1.1

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006940
Physical Location & Seq
Reverse (-)
19294197 .. 19294532
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1116300.v1.1.491

Sequence Viewer

Length: 336 bp
ATGACGGCTAAAGCAAGAAACCCGAGAAAGACCCGAAACCCAGATTTGGTTCGTGGGGTGGGTAGGTTTTTGAGGCCCAAGACGTACCACAAGTGTGATCTTTGGGCTATCAAGGTAAAAAATGGCGGTGTTTTTCAAAGCCCTGACTCGAAGCCGGTGGTTGAGACCGCATCTGAGAAAGCCCCAAAGTTCTACCCCGGCGATGACATCAAGAAGCCACTCGTCAACAATCACAAGCCAAAACCCACCAAACTCAGGATGAGTATTACACCGGGGACGTTGTTGATTATATTGGCTGGGAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

112

Amino Acids

12.51

Weight (kDa)

10.81

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e_N PF03868 3 - 43 1.9e-08 Ribosomal protein L6, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 168
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 46, 255
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 2 cut(s) 198, 273
AvaI CYCGRG 1 cut(s) 22
BceAI ACGGC 1 cut(s) 21
BcnI CCSGG 2 cut(s) 198, 273
BcoDI GTCTC 1 cut(s) 158
BfrI CTTAAG 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 198, 273
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 198, 273
BmsI GCATC 1 cut(s) 179
BpuMI CCSGG 2 cut(s) 198, 273
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 196, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 255
Bse118I RCCGGY 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 196, 272
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 46, 255
BseMII CTCAG 2 cut(s) 165, 268
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 3 cut(s) 155, 198, 272
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 46, 255
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 126, 168
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 166, 267
BspTI CTTAAG 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 196, 272
BssMI GATC 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 174, 254
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 196, 271
BsuRI GGCC 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 9 cut(s) 8, 76, 107, 141, 154, 182, 217, 238, 296
CviKI_1 RGCY 9 cut(s) 8, 76, 107, 141, 154, 182, 217, 238, 296
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 174, 254
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 22
FaiI YATR 1 cut(s) 290
FaqI GGGAC 1 cut(s) 289
FokI GGATG 1 cut(s) 271
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 76
HapII CCGG 3 cut(s) 155, 198, 272
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 146
HpaII CCGG 3 cut(s) 155, 198, 272
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 211, 256
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4IV ACGT 2 cut(s) 83, 278
HpyF3I CTNAG 2 cut(s) 174, 254
HpySE526I ACGT 2 cut(s) 83, 278
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 7 cut(s) 54, 156, 168, 211, 241, 282, 285
LweI GCATC 1 cut(s) 179
MaeII ACGT 2 cut(s) 83, 278
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 2 cut(s) 66, 294
MseI TTAA 2 cut(s) 306, 330
MslI CAYNNNNRTG 1 cut(s) 93
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 3 cut(s) 155, 198, 272
MspR9I CCNGG 2 cut(s) 198, 273
NciI CCSGG 2 cut(s) 198, 273
NdeII GATC 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 93
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 75
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 306, 330
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 198, 273
SetI ASST 5 cut(s) 68, 86, 117, 281, 305
SfaNI GCATC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 2 cut(s) 126, 168
StyD4I CCNGG 2 cut(s) 196, 271
TaiI ACGT 2 cut(s) 86, 281
TaqI TCGA 1 cut(s) 149
Tru1I TTAA 2 cut(s) 306, 330
Tru9I TTAA 2 cut(s) 306, 330
Vha464I CTTAAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.