RchiOBHm_Chr3g0488461

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006940
Physical Location & Seq
Forward (+)
36131643 .. 36132447
805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45281

Sequence Viewer

Length: 789 bp
ATGCGTACCCCACTTGTTTACCATTCTGCTCCTTCAATTCCAACCTTTCAGTCACCCTTAGTCTCCACTTTTGTGCCCCAACTCCAATTTACTGATCCAAAACCTCTTCCTCTCCATAGCAAACAGTTTCGGGGTTTCAGATGTAGAGTCGTCGTCATGGGTGCAAAAGCAAGAGTTGCCAAAAAGACCCAAAACCCAGATCTGCTCCGTTATGTGGGTAAGTACTCGAGGTCCAAGAGGTACCGCAGGTGCAGTCTATGGGCCATCAAGGCCAAAAGTGGAGGTGCCTTCCCACGTCACAACTCCAAGGCGGCAGTTGAGATTATGGAGGCTCCTCTTCAGCAACTTGTGGGTCTAAAAACTCCAGTCGATATATCAGAATCGCCGGCGGTGCAATTTGGAACTCTACTATCTTCCGGCAACACCTCGTCGTCTTCCGTTCCGGCAACGGAAGCTACAGACCACTCCACTCCCACACAAGCCCCAATTGCTTCACCTAAAGTCGCACAGAAGGTGTTCGACTTAAAGCTGGCAATGGAGATCCCAACACCAACTGCAGAAGATGATGAGATTAACAAGGTTGGGTATGTCACCATTCCTGTTGAGATTGCCGGTCCTCTCATGCTTGATGGAAGAGAGCTCTCAGTGCCCATGGCCACCACTAAAAGTTGCCGTATGGAAGACCCTGCTAAGAGACTAGCTGGATTAAAGTTCTTCATGGAAGACCCCGATAAATATGAAACCAGTTTCCATCTCAAAAAGGCAAAAAAAATGGCCAAAATCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

262

Amino Acids

28.83

Weight (kDa)

9.78

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e_N PF03868 56 - 103 8.2e-07 Ribosomal protein L6, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 237
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 2 cut(s) 240, 284
AciI CCGC 3 cut(s) 244, 311, 389
AclWI GGATC 2 cut(s) 89, 535
AcoI YGGCCR 2 cut(s) 654, 774
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 3 cut(s) 7, 224, 242
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 36
AjiI CACGTC 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 4 cut(s) 455, 529, 640, 701
AluI AGCT 4 cut(s) 455, 529, 640, 701
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 67, 688
AlwI GGATC 2 cut(s) 89, 535
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 4 cut(s) 261, 270, 654, 774
Asp700I GAANNNNTTC 1 cut(s) 515
Asp718I GGTACC 1 cut(s) 240
AspS9I GGNCC 3 cut(s) 231, 261, 614
AsuHPI GGTGA 3 cut(s) 45, 486, 583
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 231, 614
BaeGI GKGCMC 2 cut(s) 78, 651
BalI TGGCCA 2 cut(s) 656, 776
BanI GGYRCC 2 cut(s) 240, 284
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 3 cut(s) 426, 687, 729
Bbv12I GWGCWC 1 cut(s) 642
BccI CCATC 3 cut(s) 272, 623, 759
BceAI ACGGC 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 67, 688
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 2 cut(s) 456, 555
BfuAI ACCTGC 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 224
Bme18I GGWCC 2 cut(s) 231, 614
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 231, 261, 614
BmiI GGNNCC 3 cut(s) 242, 286, 333
BpiI GAAGAC 3 cut(s) 426, 687, 729
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 306, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 2 cut(s) 385, 611
Bse1I ACTGG 2 cut(s) 365, 744
Bse3DI GCAATG 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 306, 651
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 2 cut(s) 365, 744
BseRI GAGGAG 1 cut(s) 324
BseSI GKGCMC 2 cut(s) 78, 651
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 4 cut(s) 263, 272, 656, 776
BshNI GGYRCC 2 cut(s) 240, 284
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 4 cut(s) 386, 417, 443, 612
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 67, 688
BsnI GGCC 4 cut(s) 263, 272, 656, 776
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 3 cut(s) 78, 642, 651
Bsp143I GATC 3 cut(s) 94, 199, 540
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 3 cut(s) 244, 311, 389
BspANI GGCC 4 cut(s) 263, 272, 656, 776
BspCNI CTCAG 1 cut(s) 656
BspLI GGNNCC 3 cut(s) 242, 286, 333
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 2 cut(s) 89, 535
BspT107I GGYRCC 2 cut(s) 240, 284
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 385, 611
BsrI ACTGG 2 cut(s) 365, 744
BssAI RCCGGY 2 cut(s) 385, 611
BssECI CCNNGG 2 cut(s) 306, 651
BssMI GATC 3 cut(s) 94, 199, 540
BssT1I CCWWGG 2 cut(s) 306, 651
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 3 cut(s) 111, 342, 628
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 387, 531
BstDEI CTNAG 3 cut(s) 58, 643, 690
BstDSI CCRYGG 1 cut(s) 651
BstKTI GATC 3 cut(s) 97, 202, 543
BstMAI GTCTC 2 cut(s) 67, 688
BstMBI GATC 3 cut(s) 94, 199, 540
BstMWI GCNNNNNNNGC 6 cut(s) 176, 269, 391, 452, 488, 646
BstSFI CTRYAG 2 cut(s) 456, 555
BstSLI GKGCMC 2 cut(s) 78, 651
BstV2I GAAGAC 3 cut(s) 426, 687, 729
BstX2I RGATCY 2 cut(s) 199, 540
BstYI RGATCY 2 cut(s) 199, 540
BsuRI GGCC 4 cut(s) 263, 272, 656, 776
BtgI CCRYGG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 651
BveI ACCTGC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 387, 531
Cfr10I RCCGGY 2 cut(s) 385, 611
Cfr13I GGNCC 3 cut(s) 231, 261, 614
Csp6I GTAC 3 cut(s) 6, 223, 241
CviAII CATG 5 cut(s) 157, 622, 652, 718, 786
CviQI GTAC 3 cut(s) 6, 223, 241
DdeI CTNAG 3 cut(s) 58, 643, 690
DpnI GATC 3 cut(s) 96, 201, 542
DpnII GATC 3 cut(s) 94, 199, 540
EaeI YGGCCR 2 cut(s) 654, 774
Eam1104I CTCTTC 3 cut(s) 111, 342, 628
EarI CTCTTC 3 cut(s) 111, 342, 628
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 306, 651
Eco24I GRGCYC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 231, 614
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 306, 651
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 306, 651
FaeI CATG 5 cut(s) 160, 625, 655, 721, 789
FatI CATG 5 cut(s) 156, 621, 651, 717, 785
Fnu4HI GCNGC 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 698
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 4 cut(s) 263, 272, 656, 776
HapII CCGG 4 cut(s) 386, 417, 443, 612
Hin1II CATG 5 cut(s) 160, 625, 655, 721, 789
HinfI GANTC 2 cut(s) 147, 380
HpaII CCGG 4 cut(s) 386, 417, 443, 612
HphI GGTGA 3 cut(s) 45, 486, 583
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 140, 379
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 155, 433
HpyAV CCTTC 3 cut(s) 42, 298, 505
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 4 cut(s) 164, 252, 394, 557
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 269, 391, 452, 488, 646
HpyF3I CTNAG 3 cut(s) 58, 643, 690
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 5 cut(s) 160, 625, 655, 721, 789
KpnI GGTACC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Kzo9I GATC 3 cut(s) 94, 199, 540
LmnI GCTCC 3 cut(s) 34, 210, 337
MaeI CTAG 1 cut(s) 698
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 51, 296, 589
MalI GATC 3 cut(s) 96, 201, 542
MboI GATC 3 cut(s) 94, 199, 540
MboII GAAGA 9 cut(s) 98, 329, 405, 426, 572, 645, 692, 706, 734
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 199, 540
MhlI GDGCHC 3 cut(s) 78, 642, 651
MlsI TGGCCA 2 cut(s) 656, 776
MluCI AATT 4 cut(s) 36, 86, 395, 486
MluNI TGGCCA 2 cut(s) 656, 776
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 9 cut(s) 114, 120, 222, 231, 275, 322, 345, 436, 627
Mox20I TGGCCA 2 cut(s) 656, 776
MreI CGCCGGCG 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 515
MscI TGGCCA 2 cut(s) 656, 776
MseI TTAA 3 cut(s) 524, 573, 707
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 2 cut(s) 656, 776
MspI CCGG 4 cut(s) 386, 417, 443, 612
MunI CAATTG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 176, 269, 391, 452, 488, 646
NaeI GCCGGC 1 cut(s) 387
NcoI CCATGG 1 cut(s) 651
NdeII GATC 3 cut(s) 94, 199, 540
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 5 cut(s) 160, 625, 655, 721, 789
NlaIV GGNNCC 3 cut(s) 242, 286, 333
NmuCI GTSAC 3 cut(s) 51, 296, 589
OliI CACNNNNGTG 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 242, 286, 333
PspPI GGNCC 3 cut(s) 231, 261, 614
PspXI VCTCGAGB 1 cut(s) 226
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 199, 540
RsaI GTAC 3 cut(s) 7, 224, 242
RsaNI GTAC 3 cut(s) 6, 223, 241
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 524, 573, 707
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 3 cut(s) 94, 199, 540
Sau96I GGNCC 3 cut(s) 231, 261, 614
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 156
SduI GDGCHC 3 cut(s) 78, 642, 651
SfcI CTRYAG 2 cut(s) 456, 555
SfiI GGCCNNNNNGGCC 1 cut(s) 269
Sfr274I CTCGAG 1 cut(s) 226
SgrAI CRCCGGYG 1 cut(s) 385
SinI GGWCC 2 cut(s) 231, 614
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 36, 86, 395, 486
SsiI CCGC 3 cut(s) 244, 311, 389
SspMI CTAG 1 cut(s) 698
SstI GAGCTC 1 cut(s) 642
StyI CCWWGG 2 cut(s) 306, 651
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 298
TaqI TCGA 3 cut(s) 227, 369, 519
TasI AATT 4 cut(s) 36, 86, 395, 486
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 3 cut(s) 524, 573, 707
Tru9I TTAA 3 cut(s) 524, 573, 707
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 3 cut(s) 51, 296, 589
Tsp45I GTSAC 3 cut(s) 51, 296, 589
TspDTI ATGAA 2 cut(s) 706, 753
TspGWI ACGGA 3 cut(s) 197, 427, 464
TspRI CASTG 1 cut(s) 651
VpaK11BI GGWCC 2 cut(s) 231, 614
XhoI CTCGAG 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.