Rmu_sc0008393.1_g000001

60s ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008393.1
Physical Location & Seq
Forward (+)
1771 .. 10892
9122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008393.1_g000001.1.cds

Sequence Viewer

Length: 1077 bp
atgtcaattctggacttggatcctgaggatcctaacaactggtatcagagcccgcacctgggcctgtttccggttagtccgggtatggcggtgggatctccgcggcttgttattgcacgcattcgtctcaccctcactgcagccctagctacccaccaccactttcccaaacaatcatcaatggtttccagtgttcattctccgttcatcttcaccaaaaccatgaccacaccacctatttaccattatgctccttcaatccaaacctttcagtcacccttggtccctacttttatgccccaactcccaattacatatcccaaacctctttctctgaatcgaaagtcgtttcagcgtttcagacatagagtcgccatggcggcgaaagagagaattgccaaaaagacccgaaacccatatatgttccatggtatgggtaagtactcgaggtccaagatgtaccacaagcgcgatctttgggccatcaaggccaaaaatggaggtgccttcccacgtcacaactccaaggaggcaggtgagattatggaggagctgggtcagctacgtgtgggtcgaaaaactttgatcgatacatcggaaccaccggcggtgcagttcggaactccacctactaccggaaacacttcgtcgttttcatttccggtaacggaacccacagaccactccatttccacacaagcttcagctggttcatctcttcctccatcaattgaggctacagggtttgttggagatatatcgctggacatcccagctgtggcagtgaatttggctggtatcaatgagtctgcacatgatgtagacccgaatgcaagcactggttctcagatagttactgaaatcaatgtgggtgtacagattagtgaagatgtgttgttgcctgaatatgttctcccagcagaggtttctgtgaatactgaaaatgggcataattggattgagatgggggtaggcggcactggccatgtatggcctgtctttgcacaatcatggcgccatgaggcacatgtgcagctcctcgaaccaattcttggttcttacttttgttcattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

39.33

Weight (kDa)

7.31

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 2 cut(s) 503, 1014
AccB7I CCANNNNNTGG 2 cut(s) 433, 1052
AccI GTMKAC 1 cut(s) 822
AccII CGCG 2 cut(s) 103, 471
AciI CCGC 7 cut(s) 53, 89, 101, 103, 380, 608, 975
AclWI GGATC 5 cut(s) 14, 23, 27, 36, 103
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 1 cut(s) 787
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 1015
AfaI GTAC 3 cut(s) 443, 461, 876
AfiI CCNNNNNNNGG 8 cut(s) 58, 59, 70, 433, 635, 778, 922, 1052
AflIII ACRYGT 2 cut(s) 565, 1027
AgsI TTSAA 1 cut(s) 258
AhdI GACNNNNNGTC 1 cut(s) 368
AjiI CACGTC 1 cut(s) 515
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 4 cut(s) 1035, 1039, 1067, 1071
AluBI AGCT 7 cut(s) 149, 553, 562, 701, 707, 776, 1036
AluI AGCT 7 cut(s) 149, 553, 562, 701, 707, 776, 1036
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 5 cut(s) 14, 23, 27, 36, 103
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 5 cut(s) 61, 480, 489, 982, 992
ApeKI GCWGC 2 cut(s) 140, 1033
ApoI RAATTY 1 cut(s) 787
Asp700I GAANNNNTTC 3 cut(s) 643, 909, 1047
AspLEI GCGC 2 cut(s) 471, 1017
AspS9I GGNCC 4 cut(s) 61, 283, 450, 480
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 4 cut(s) 121, 205, 267, 548
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 2 cut(s) 283, 450
AxyI CCTNAGG 1 cut(s) 24
BalI TGGCCA 1 cut(s) 984
BamHI GGATCC 2 cut(s) 19, 28
BanI GGYRCC 2 cut(s) 503, 1014
BanII GRGCYC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 152, 1045
BccI CCATC 3 cut(s) 491, 733, 958
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 138, 738
BfoI RGCGCY 1 cut(s) 1018
BfuAI ACCTGC 1 cut(s) 524
BglI GCCNNNNNGGC 2 cut(s) 380, 488
BisI GCNGC 5 cut(s) 104, 141, 381, 976, 1034
BlsI GCNGC 5 cut(s) 105, 142, 382, 977, 1035
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 59, 81
Bme18I GGWCC 2 cut(s) 283, 450
BmeRI GACNNNNNGTC 1 cut(s) 368
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 515
BmgT120I GGNCC 4 cut(s) 61, 283, 450, 480
BmiI GGNNCC 7 cut(s) 21, 30, 285, 505, 600, 672, 1016
BmrFI CCNGG 2 cut(s) 59, 81
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 1015
BsaJI CCNNGG 6 cut(s) 58, 101, 279, 375, 427, 525
BsaWI WCCGGW 3 cut(s) 70, 635, 661
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 59, 70, 433, 635, 778, 922, 1052
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 4 cut(s) 44, 189, 844, 985
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 6 cut(s) 58, 101, 279, 375, 427, 525
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 8 cut(s) 58, 59, 70, 433, 635, 778, 922, 1052
BseMII CTCAG 2 cut(s) 15, 860
BseNI ACTGG 4 cut(s) 44, 189, 844, 985
BseRI GAGGAG 2 cut(s) 563, 1028
BseXI GCAGC 2 cut(s) 152, 1045
BseYI CCCAGC 3 cut(s) 553, 772, 916
BsgI GTGCAG 3 cut(s) 632, 795, 1052
Bsh1236I CGCG 2 cut(s) 103, 471
BshFI GGCC 5 cut(s) 63, 482, 491, 984, 994
BshNI GGYRCC 2 cut(s) 503, 1014
BshVI ATCGAT 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 5 cut(s) 71, 80, 605, 636, 662
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 8 cut(s) 58, 59, 70, 433, 635, 778, 922, 1052
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 120, 835
BsnI GGCC 5 cut(s) 63, 482, 491, 984, 994
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 5 cut(s) 19, 28, 95, 472, 585
Bsp19I CCATGG 2 cut(s) 375, 427
BspACI CCGC 7 cut(s) 53, 89, 101, 103, 380, 608, 975
BspANI GGCC 5 cut(s) 63, 482, 491, 984, 994
BspCNI CTCAG 2 cut(s) 16, 859
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 2 cut(s) 103, 471
BspLI GGNNCC 7 cut(s) 21, 30, 285, 505, 600, 672, 1016
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 5 cut(s) 14, 23, 27, 36, 103
BspT107I GGYRCC 2 cut(s) 503, 1014
BsrFI RCCGGY 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 4 cut(s) 44, 189, 844, 985
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 6 cut(s) 58, 101, 279, 375, 427, 525
BssMI GATC 5 cut(s) 19, 28, 95, 472, 585
BssNI GRCGYC 1 cut(s) 1015
BssT1I CCWWGG 4 cut(s) 279, 375, 427, 525
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 723
BstACI GRCGYC 1 cut(s) 1015
BstAUI TGTACA 1 cut(s) 874
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 3 cut(s) 53, 118, 835
BstDEI CTNAG 2 cut(s) 24, 846
BstDSI CCRYGG 3 cut(s) 101, 375, 427
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 2 cut(s) 103, 471
BstH2I RGCGCY 1 cut(s) 1018
BstHHI GCGC 2 cut(s) 471, 1017
BstKTI GATC 5 cut(s) 22, 31, 98, 475, 588
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 5 cut(s) 19, 28, 95, 472, 585
BstMWI GCNNNNNNNGC 5 cut(s) 146, 380, 488, 559, 981
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 1031
BstSCI CCNGG 2 cut(s) 57, 79
BstSFI CTRYAG 2 cut(s) 138, 738
BstUI CGCG 2 cut(s) 103, 471
BstV1I GCAGC 2 cut(s) 152, 1045
BstX2I RGATCY 3 cut(s) 19, 28, 95
BstYI RGATCY 3 cut(s) 19, 28, 95
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 5 cut(s) 63, 482, 491, 984, 994
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 3 cut(s) 101, 375, 427
BtrI CACGTC 1 cut(s) 515
BtsCI GGATG 1 cut(s) 768
BtsI GCAGTG 2 cut(s) 135, 789
BtsIMutI CAGTG 5 cut(s) 135, 196, 789, 837, 978
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 53, 118, 835
CfoI GCGC 2 cut(s) 471, 1017
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 4 cut(s) 61, 283, 450, 480
Cfr42I CCGCGG 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 3 cut(s) 442, 460, 875
CviAII CATG 8 cut(s) 223, 376, 428, 815, 986, 1011, 1019, 1028
CviQI GTAC 3 cut(s) 442, 460, 875
DdeI CTNAG 2 cut(s) 24, 846
DinI GGCGCC 1 cut(s) 1016
DpnI GATC 5 cut(s) 21, 30, 97, 474, 587
DpnII GATC 5 cut(s) 19, 28, 95, 472, 585
DriI GACNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 723
Eam1105I GACNNNNNGTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 723
Eco130I CCWWGG 4 cut(s) 279, 375, 427, 525
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 283, 450
Eco57I CTGAAG 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 4 cut(s) 279, 375, 427, 525
EcoT38I GRGCYC 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 1016
EheI GGCGCC 1 cut(s) 1016
ErhI CCWWGG 4 cut(s) 279, 375, 427, 525
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 8 cut(s) 226, 379, 431, 818, 989, 1014, 1022, 1031
FaqI GGGAC 1 cut(s) 269
FatI CATG 8 cut(s) 222, 375, 427, 814, 985, 1010, 1018, 1027
FauI CCCGC 1 cut(s) 60
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 5 cut(s) 104, 141, 381, 976, 1034
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 5 cut(s) 104, 141, 381, 976, 1034
FspBI CTAG 1 cut(s) 146
GlaI GCGC 2 cut(s) 470, 1016
GluI GCNGC 5 cut(s) 104, 141, 381, 976, 1034
GsaI CCCAGC 3 cut(s) 557, 776, 920
HaeII RGCGCY 1 cut(s) 1018
HaeIII GGCC 5 cut(s) 63, 482, 491, 984, 994
HapII CCGG 5 cut(s) 71, 80, 605, 636, 662
HhaI GCGC 2 cut(s) 471, 1017
Hin1I GRCGYC 1 cut(s) 1015
Hin1II CATG 8 cut(s) 226, 379, 431, 818, 989, 1014, 1022, 1031
Hin6I GCGC 2 cut(s) 469, 1015
HinP1I GCGC 2 cut(s) 469, 1015
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 3 cut(s) 337, 369, 806
HpaII CCGG 5 cut(s) 71, 80, 605, 636, 662
HphI GGTGA 4 cut(s) 121, 205, 267, 548
Hpy166II GTNNAC 2 cut(s) 823, 875
Hpy188I TCNGA 7 cut(s) 48, 336, 362, 598, 620, 849, 1076
Hpy188III TCNNGA 2 cut(s) 11, 23
Hpy8I GTNNAC 2 cut(s) 823, 875
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 2 cut(s) 264, 517
HpyCH4IV ACGT 2 cut(s) 514, 565
HpyCH4V TGCA 7 cut(s) 116, 140, 613, 812, 833, 1004, 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 380, 488, 559, 981
HpyF3I CTNAG 2 cut(s) 24, 846
HpySE526I ACGT 2 cut(s) 514, 565
Hsp92I GRCGYC 1 cut(s) 1015
Hsp92II CATG 8 cut(s) 226, 379, 431, 818, 989, 1014, 1022, 1031
HspAI GCGC 2 cut(s) 469, 1015
KasI GGCGCC 1 cut(s) 1014
KspI CCGCGG 1 cut(s) 104
Kzo9I GATC 5 cut(s) 19, 28, 95, 472, 585
LmnI GCTCC 3 cut(s) 256, 550, 1041
Lsp1109I GCAGC 2 cut(s) 152, 1045
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 514, 565
MaeIII GTNAC 4 cut(s) 273, 515, 664, 853
MalI GATC 5 cut(s) 21, 30, 97, 474, 587
MboI GATC 5 cut(s) 19, 28, 95, 472, 585
MboII GAAGA 3 cut(s) 202, 710, 899
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 3 cut(s) 19, 28, 95
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 984
MluCI AATT 7 cut(s) 6, 309, 393, 729, 787, 952, 1047
MluNI TGGCCA 1 cut(s) 984
Mly113I GGCGCC 1 cut(s) 1015
MlyI GAGTC 2 cut(s) 378, 815
MmeI TCCRAC 1 cut(s) 730
Mox20I TGGCCA 1 cut(s) 984
MroXI GAANNNNTTC 3 cut(s) 643, 909, 1047
MscI TGGCCA 1 cut(s) 984
MslI CAYNNNNRTG 1 cut(s) 1009
Msp20I TGGCCA 1 cut(s) 984
MspA1I CMGCKG 3 cut(s) 103, 707, 776
MspI CCGG 5 cut(s) 71, 80, 605, 636, 662
MspR9I CCNGG 2 cut(s) 59, 81
MunI CAATTG 1 cut(s) 729
Mva1269I GAATGC 2 cut(s) 120, 835
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 2 cut(s) 103, 471
MwoI GCNNNNNNNGC 5 cut(s) 146, 380, 488, 559, 981
NarI GGCGCC 1 cut(s) 1015
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 2 cut(s) 375, 427
NdeII GATC 5 cut(s) 19, 28, 95, 472, 585
NlaIII CATG 8 cut(s) 226, 379, 431, 818, 989, 1014, 1022, 1031
NlaIV GGNNCC 7 cut(s) 21, 30, 285, 505, 600, 672, 1016
NmuCI GTSAC 2 cut(s) 273, 515
NspI RCATGY 1 cut(s) 1031
PaeR7I CTCGAG 1 cut(s) 445
PaqCI CACCTGC 1 cut(s) 524
PciI ACATGT 1 cut(s) 1027
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PctI GAATGC 2 cut(s) 120, 835
PdmI GAANNNNTTC 3 cut(s) 643, 909, 1047
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 2 cut(s) 433, 1052
PkrI GCNGC 5 cut(s) 105, 142, 382, 977, 1035
PleI GAGTC 2 cut(s) 377, 814
PluTI GGCGCC 1 cut(s) 1018
PpsI GAGTC 2 cut(s) 377, 814
Ppu21I YACGTR 1 cut(s) 566
PscI ACATGT 1 cut(s) 1027
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 3 cut(s) 553, 772, 916
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 7 cut(s) 21, 30, 285, 505, 600, 672, 1016
PspPI GGNCC 4 cut(s) 61, 283, 450, 480
PspXI VCTCGAGB 1 cut(s) 445
PsrI GAACNNNNNNTAC 2 cut(s) 613, 645
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 3 cut(s) 19, 28, 95
PvuII CAGCTG 2 cut(s) 707, 776
RsaI GTAC 3 cut(s) 443, 461, 876
RsaNI GTAC 3 cut(s) 442, 460, 875
RseI CAYNNNNRTG 1 cut(s) 1009
SacII CCGCGG 1 cut(s) 104
SatI GCNGC 5 cut(s) 104, 141, 381, 976, 1034
Sau3AI GATC 5 cut(s) 19, 28, 95, 472, 585
Sau96I GGNCC 4 cut(s) 61, 283, 450, 480
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 2 cut(s) 378, 815
ScrFI CCNGG 2 cut(s) 59, 81
SduI GDGCHC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 138, 738
SfiI GGCCNNNNNGGCC 1 cut(s) 488
SfoI GGCGCC 1 cut(s) 1016
Sfr274I CTCGAG 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 104
SgrAI CRCCGGYG 1 cut(s) 604
SgrBI CCGCGG 1 cut(s) 104
SinI GGWCC 2 cut(s) 283, 450
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 1009
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 7 cut(s) 6, 309, 393, 729, 787, 952, 1047
SsiI CCGC 7 cut(s) 53, 89, 101, 103, 380, 608, 975
SspDI GGCGCC 1 cut(s) 1014
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 57, 79
StyI CCWWGG 4 cut(s) 279, 375, 427, 525
TaiI ACGT 2 cut(s) 517, 568
TaqI TCGA 5 cut(s) 340, 446, 574, 588, 1041
TasI AATT 7 cut(s) 6, 309, 393, 729, 787, 952, 1047
TatI WGTACW 2 cut(s) 441, 874
TauI GCSGC 3 cut(s) 106, 383, 978
TfiI GAWTC 1 cut(s) 337
TscAI CASTG 5 cut(s) 142, 196, 789, 844, 985
TseFI GTSAC 2 cut(s) 273, 515
TseI GCWGC 2 cut(s) 140, 1033
Tsp45I GTSAC 2 cut(s) 273, 515
TspDTI ATGAA 5 cut(s) 185, 196, 645, 702, 1059
TspGWI ACGGA 2 cut(s) 192, 683
TspRI CASTG 5 cut(s) 142, 196, 789, 844, 985
Van91I CCANNNNNTGG 2 cut(s) 433, 1052
VpaK11BI GGWCC 2 cut(s) 283, 450
XapI RAATTY 1 cut(s) 787
XceI RCATGY 1 cut(s) 1031
XhoI CTCGAG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 3 cut(s) 643, 909, 1047
XspI CTAG 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.