Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

30565923 .. 30569135

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCCTCTCATCTCATCTCCGGATGGAATCGGGCAAGCATTACCCCTGGAGCTGTATTGATCGTTATGGCTGGAAGATTCAAGGGCAATAGGGTTGTCTTTTTGAAGGACCAGATCAGAGCCCTATACATAGATGTAATGTGCAACCCACTGATCGTATACAGATTCATAGTAGTGCAAGTCATATCTGACCCAACAAACCCTAAATTGTCTTGCATATATGCCTCCGCGGAACGACAGTATGAAGGGGCGTCCGAGGACTCGCAATCCCGATCTGACATGCACCAAGGAGCAGATGATTACTTTTTTCAACATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

6.81

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	2 cut(s)	228, 230
AcyI	GRCGYC	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	82, 106, 311
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	124
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	46, 228, 255, 286
BsaWI	WCCGGW	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	46, 228, 255, 286
BseGI	GGATG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	60, 114, 153, 272
BspACI	CCGC	2 cut(s)	228, 230
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	230
BssECI	CCNNGG	4 cut(s)	46, 228, 255, 286
BssMI	GATC	4 cut(s)	60, 114, 153, 272
BssNAI	GTATAC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	4 cut(s)	63, 117, 156, 275
BstMBI	GATC	4 cut(s)	60, 114, 153, 272
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	230
BstZ17I	GTATAC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	1 cut(s)	240
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	3 cut(s)	53, 71, 122
CviKI_1	RGCY	3 cut(s)	53, 71, 122
DpnI	GATC	4 cut(s)	62, 116, 155, 274
DpnII	GATC	4 cut(s)	60, 114, 153, 272
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	283
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	69
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	4 cut(s)	28, 78, 165, 260
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	119, 190, 256, 277
Hpy188III	TCNNGA	2 cut(s)	21, 270
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	100, 239
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	144, 178, 216, 283
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	60, 114, 153, 272
LmnI	GCTCC	2 cut(s)	50, 290
LpnPI	CCDG	5 cut(s)	33, 34, 57, 60, 125
MalI	GATC	4 cut(s)	62, 116, 155, 274
MboI	GATC	4 cut(s)	60, 114, 153, 272
MboII	GAAGA	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	16, 235, 250
MroI	TCCGGA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	230
NdeII	GATC	4 cut(s)	60, 114, 153, 272
NlaIII	CATG	1 cut(s)	283
NspI	RCATGY	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	28, 78, 165
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	173
SacII	CCGCGG	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	60, 114, 153, 272
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	228, 230
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	240
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	28, 78, 165
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	157, 258
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.