RchiOBHm_Chr4g0387091

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006940
Physical Location & Seq
Forward (+)
2360021 .. 2361110
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36043

Sequence Viewer

Length: 840 bp
ATGGTGACCAACTTCATACAACCCAATCCTTACCCACCTCCGCCACACAACCCTTCTGCACCCATCATCAATGGCCACTTACTCCCTCATCAATTTTCATGTGTTCCTCAGACTCACTCCCATTTCGTCCCACCTCCATACTTGCAACCGATTCATCCTATTGCTCCACCTTCACCTATCGTTGCATTATCTGAAGGTCAGGTGTTCGATCCACCTTCACCGCAACCACTCACTTTTGTGCCCCAACCTCAATGTCCAGATCCCAAACCTCTTTCTCTGAATCGCAAGTTGTTTCGGCTTTTCAGACATAGAGTCGCCATGGCGGCGAAAGAGAGAATTGCCAAAAAGACCCAAAACCCATATATGCTCCATGGTGTGGGTAAGTACTCGAGGTCCGAGATGTACCACAAGCGCAGTCTTTGGGCCATCCAGGCAGAAAATGGAGGTGCCTTCCCACGTCACAACTCCAAGGCAACAGTTGAGATTATGGAGGAGCTGGGTCAGCTACGTGTGGGTCGAAAAACTCTGATCGGTACATCAGAATCACCGGCGGTGCAGTTCGGAACTCTACTGTCTTCCGGAAACACCTCGTCTTCTTTAGTTCAGGCAACGGAAGCCCCAGACCACTTTACTCCCACACAAGCCCCAATTGCTTCACCTAAAGTTGCTCAGAAGGTGTTTGACGAAATGACTGAAACACCAACCCAGAGCAAACGCACAAAGCCCGAGCAACTCCTCGCGGCGACGACGTTTCAGACTATCTCGGCCAACTCTCCGATGGTTTTTCCGACCCGCCCAGGTTTGGAAGGGCAAGTCAAAGTAATGACCCAGATCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

279

Amino Acids

30.77

Weight (kDa)

9.79

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e_N PF03868 110 - 157 1.8e-09 Ribosomal protein L6, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 1 cut(s) 740
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 6 cut(s) 41, 221, 323, 551, 740, 793
AclWI GGATC 2 cut(s) 203, 254
AcoI YGGCCR 2 cut(s) 73, 765
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 3 cut(s) 386, 404, 535
AfiI CCNNNNNNNGG 2 cut(s) 376, 802
AflIII ACRYGT 1 cut(s) 508
AhdI GACNNNNNGTC 1 cut(s) 311
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 2 cut(s) 429, 796
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 2 cut(s) 496, 505
AluI AGCT 2 cut(s) 496, 505
AlwI GGATC 2 cut(s) 203, 254
Ama87I CYCGRG 2 cut(s) 388, 725
Aor13HI TCCGGA 1 cut(s) 578
AoxI GGCC 3 cut(s) 73, 423, 765
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 2 cut(s) 393, 423
AsuHPI GGTGA 5 cut(s) 16, 165, 210, 537, 648
AvaI CYCGRG 2 cut(s) 388, 725
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 75
BanI GGYRCC 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 567, 585
BccI CCATC 3 cut(s) 71, 434, 772
BciT130I CCWGG 2 cut(s) 431, 798
BglI GCCNNNNNGGC 2 cut(s) 323, 431
BisI GCNGC 2 cut(s) 324, 741
BlsI GCNGC 2 cut(s) 325, 742
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 431, 798
Bme18I GGWCC 1 cut(s) 393
BmeRI GACNNNNNGTC 1 cut(s) 311
BmeT110I CYCGRG 2 cut(s) 388, 725
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 393, 423
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 2 cut(s) 431, 798
BpiI GAAGAC 2 cut(s) 567, 585
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 318, 370, 468, 796
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 802
Bse118I RCCGGY 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 431, 798
BseDI CCNNGG 4 cut(s) 318, 370, 468, 796
BseGI GGATG 2 cut(s) 154, 426
BseLI CCNNNNNNNGG 2 cut(s) 376, 802
BseMII CTCAG 2 cut(s) 122, 683
BseRI GAGGAG 2 cut(s) 506, 725
BseSI GKGCMC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 496
BsgI GTGCAG 2 cut(s) 42, 575
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 3 cut(s) 75, 425, 767
BshNI GGYRCC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 388, 725
BsiSI CCGG 2 cut(s) 548, 579
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 376, 802
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 75, 425, 767
BsoBI CYCGRG 2 cut(s) 388, 725
Bsp1286I GDGCHC 1 cut(s) 243
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 208, 259, 528, 831
Bsp19I CCATGG 2 cut(s) 318, 370
BspACI CCGC 6 cut(s) 41, 221, 323, 551, 740, 793
BspANI GGCC 3 cut(s) 75, 425, 767
BspCNI CTCAG 2 cut(s) 121, 682
BspEI TCCGGA 1 cut(s) 578
BspFNI CGCG 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 2 cut(s) 203, 254
BspT107I GGYRCC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 4 cut(s) 318, 370, 468, 796
BssMI GATC 4 cut(s) 208, 259, 528, 831
BssT1I CCWWGG 3 cut(s) 318, 370, 468
Bst2UI CCWGG 2 cut(s) 431, 798
Bst4CI ACNGT 2 cut(s) 478, 573
BstBAI YACGTR 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 108, 669
BstDSI CCRYGG 2 cut(s) 318, 370
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 154, 426
BstFNI CGCG 1 cut(s) 740
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 4 cut(s) 211, 262, 531, 834
BstMBI GATC 4 cut(s) 208, 259, 528, 831
BstMWI GCNNNNNNNGC 5 cut(s) 323, 431, 502, 614, 650
BstNI CCWGG 2 cut(s) 431, 798
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 429, 796
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 740
BstV2I GAAGAC 2 cut(s) 567, 585
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 3 cut(s) 75, 425, 767
BtgI CCRYGG 2 cut(s) 318, 370
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 154, 426
CfoI GCGC 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 393, 423
Csp6I GTAC 3 cut(s) 385, 403, 534
CviAII CATG 3 cut(s) 99, 319, 371
CviJI RGCY 9 cut(s) 75, 298, 425, 496, 505, 617, 644, 724, 767
CviKI_1 RGCY 9 cut(s) 75, 298, 425, 496, 505, 617, 644, 724, 767
CviQI GTAC 3 cut(s) 385, 403, 534
DdeI CTNAG 2 cut(s) 108, 669
DpnI GATC 4 cut(s) 210, 261, 530, 833
DpnII GATC 4 cut(s) 208, 259, 528, 831
DriI GACNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 2 cut(s) 73, 765
Eam1105I GACNNNNNGTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 318, 370, 468
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 388, 725
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 429, 796
EcoT14I CCWWGG 3 cut(s) 318, 370, 468
ErhI CCWWGG 3 cut(s) 318, 370, 468
FaeI CATG 3 cut(s) 102, 322, 374
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 98, 318, 370
FauI CCCGC 1 cut(s) 800
Fnu4HI GCNGC 2 cut(s) 324, 741
FokI GGATG 2 cut(s) 141, 413
Fsp4HI GCNGC 2 cut(s) 324, 741
GlaI GCGC 1 cut(s) 413
GluI GCNGC 2 cut(s) 324, 741
GsaI CCCAGC 1 cut(s) 500
HaeIII GGCC 3 cut(s) 75, 425, 767
HapII CCGG 2 cut(s) 548, 579
HhaI GCGC 1 cut(s) 414
Hin1II CATG 3 cut(s) 102, 322, 374
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HinfI GANTC 5 cut(s) 112, 151, 280, 312, 542
HpaII CCGG 2 cut(s) 548, 579
HphI GGTGA 5 cut(s) 16, 165, 210, 537, 648
Hpy188III TCNNGA 2 cut(s) 257, 579
Hpy99I CGWCG 2 cut(s) 748, 751
HpyAV CCTTC 7 cut(s) 63, 180, 188, 225, 460, 667, 800
HpyCH4III ACNGT 2 cut(s) 478, 573
HpyCH4IV ACGT 3 cut(s) 457, 508, 749
HpyCH4V TGCA 4 cut(s) 59, 145, 185, 556
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 431, 502, 614, 650
HpyF3I CTNAG 2 cut(s) 108, 669
HpySE526I ACGT 3 cut(s) 457, 508, 749
Hsp92II CATG 3 cut(s) 102, 322, 374
HspAI GCGC 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 4 cut(s) 208, 259, 528, 831
LmnI GCTCC 3 cut(s) 169, 372, 493
MaeII ACGT 3 cut(s) 457, 508, 749
MaeIII GTNAC 2 cut(s) 4, 458
MalI GATC 4 cut(s) 210, 261, 530, 833
MboI GATC 4 cut(s) 208, 259, 528, 831
MboII GAAGA 2 cut(s) 567, 585
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 3 cut(s) 92, 336, 648
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 2 cut(s) 106, 321
MmeI TCCRAC 1 cut(s) 812
Mox20I TGGCCA 1 cut(s) 75
MroI TCCGGA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 75
MspI CCGG 2 cut(s) 548, 579
MspR9I CCNGG 2 cut(s) 431, 798
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 2 cut(s) 431, 798
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 5 cut(s) 323, 431, 502, 614, 650
NcoI CCATGG 2 cut(s) 318, 370
NdeII GATC 4 cut(s) 208, 259, 528, 831
NlaIII CATG 3 cut(s) 102, 322, 374
NlaIV GGNNCC 1 cut(s) 448
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 2 cut(s) 4, 458
OliI CACNNNNGTG 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PfeI GAWTC 3 cut(s) 151, 280, 542
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 2 cut(s) 325, 742
PleI GAGTC 2 cut(s) 106, 320
PpsI GAGTC 2 cut(s) 106, 320
Ppu21I YACGTR 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 429, 796
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 429, 796
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 2 cut(s) 393, 423
PspXI VCTCGAGB 1 cut(s) 388
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 3 cut(s) 386, 404, 535
RsaNI GTAC 3 cut(s) 385, 403, 534
RseI CAYNNNNRTG 1 cut(s) 236
SatI GCNGC 2 cut(s) 324, 741
Sau3AI GATC 4 cut(s) 208, 259, 528, 831
Sau96I GGNCC 2 cut(s) 393, 423
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 2 cut(s) 106, 321
ScrFI CCNGG 2 cut(s) 431, 798
SduI GDGCHC 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 388
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 3 cut(s) 92, 336, 648
SsiI CCGC 6 cut(s) 41, 221, 323, 551, 740, 793
StyD4I CCNGG 2 cut(s) 429, 796
StyI CCWWGG 3 cut(s) 318, 370, 468
TaaI ACNGT 2 cut(s) 478, 573
TaiI ACGT 3 cut(s) 460, 511, 752
TaqI TCGA 3 cut(s) 207, 389, 517
TasI AATT 3 cut(s) 92, 336, 648
TatI WGTACW 1 cut(s) 384
TauI GCSGC 2 cut(s) 326, 743
TfiI GAWTC 3 cut(s) 151, 280, 542
TseFI GTSAC 2 cut(s) 4, 458
Tsp45I GTSAC 2 cut(s) 4, 458
TspDTI ATGAA 3 cut(s) 4, 87, 143
TspGWI ACGGA 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 2 cut(s) 437, 775
XhoI CTCGAG 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.