Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000276.1

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

37167 .. 38042

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000276.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtcgtttcctggctacgatcccggggatcgtaacaattggtatcaaagcctgcaactgggcctgtttccggtgagtccggcgggttacagtggtgggatctctgccgcttgttacctcacacattcgtctcaccctcacggtagccctagctacccaccacgtccttcccaatttccattgcaaccaagctatcgacctcctcctccatttccattccaaacgagttactcacaatcaccaccaccaccctcccaaacaatcattaatgggtatgttttccctcatcaatttccctgtgtttctcaaactcacgcacagttcagctttcctcctcaattgcaacccatttatcctactgctcaacagccgctcaccaccacttctcaaagtccatcaatccctcattctaacccaaatccatggatataccccccgatttcacaaagccattcctgtgaccctcattctcagttcgtctccaccaaacccatgactacaacacctatttaccattctgctccttcacctcccgtttgtgagaaaccacattcaccaccacaaggttctggcaaattgcaagttcacaaacagcagacagaagctaagttgtgtgagatgcgtgaatcattgaagagtttgatggataccttcatatctgaattcagggaggagctgcggttgttaagaggttcattacaatctccgacaagccaagttgataacccactgaagtttggctctccaccgccgtcgtcaacaccccaattgattccggctgcaaatgaggcttcatcatcacttattcctactgatgatcgtattattcgtaaaactcctgtggataatgactttaattttctcacactgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.13

Weight (kDa)

7.17

Isoelectric Point (pI)

75.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	5 cut(s)	83, 108, 371, 679, 749
AclWI	GGATC	3 cut(s)	14, 36, 107
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	752
AfiI	CCNNNNNNNGG	3 cut(s)	58, 70, 563
AgsI	TTSAA	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	871
AluBI	AGCT	5 cut(s)	153, 192, 327, 605, 676
AluI	AGCT	5 cut(s)	153, 192, 327, 605, 676
Alw26I	GTCTC	2 cut(s)	135, 484
AlwI	GGATC	3 cut(s)	14, 36, 107
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	676, 779
ApoI	RAATTY	1 cut(s)	662
AseI	ATTAAT	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	24, 25
AsuHPI	GGTGA	6 cut(s)	85, 125, 231, 367, 519, 546
AvaI	CYCGRG	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	663, 766
BccI	CCATC	2 cut(s)	403, 637
BceAI	ACGGC	1 cut(s)	736
BciT130I	CCWGG	1 cut(s)	12
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	2 cut(s)	24, 25
BcoDI	GTCTC	2 cut(s)	135, 484
BfaI	CTAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	4 cut(s)	108, 371, 677, 780
BlsI	GCNGC	4 cut(s)	109, 372, 678, 781
Bme1390I	CCNGG	3 cut(s)	12, 24, 25
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	12, 24, 25
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	24, 25
BsaJI	CCNNGG	3 cut(s)	23, 24, 422
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 70, 563
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	23, 24, 422
BseLI	CCNNNNNNNGG	3 cut(s)	58, 70, 563
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	4 cut(s)	192, 195, 324, 686
BseXI	GCAGC	2 cut(s)	663, 766
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	4 cut(s)	24, 71, 80, 776
BslI	CCNNNNNNNGG	3 cut(s)	58, 70, 563
BsmAI	GTCTC	2 cut(s)	135, 484
BsmBI	CGTCTC	2 cut(s)	135, 484
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	19, 28, 99, 817
Bsp19I	CCATGG	1 cut(s)	422
BspACI	CCGC	5 cut(s)	83, 108, 371, 679, 749
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	484
BspPI	GGATC	3 cut(s)	14, 36, 107
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	23, 24, 422
BssMI	GATC	4 cut(s)	19, 28, 99, 817
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	92, 143, 321
Bst6I	CTCTTC	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	471, 606
BstDSI	CCRYGG	1 cut(s)	422
BstKTI	GATC	4 cut(s)	22, 31, 102, 820
BstMAI	GTCTC	2 cut(s)	135, 484
BstMBI	GATC	4 cut(s)	19, 28, 99, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	10, 22, 23
BstV1I	GCAGC	2 cut(s)	663, 766
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	422
BtrI	CACGTC	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	97, 728, 866
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	23
CviAII	CATG	2 cut(s)	423, 493
DdeI	CTNAG	2 cut(s)	471, 606
DpnI	GATC	4 cut(s)	21, 30, 101, 819
DpnII	GATC	4 cut(s)	19, 28, 99, 817
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
Esp3I	CGTCTC	2 cut(s)	135, 484
FaeI	CATG	2 cut(s)	426, 496
FaiI	YATR	5 cut(s)	276, 424, 430, 494, 656
FatI	CATG	2 cut(s)	422, 492
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	108, 371, 677, 780
Fsp4HI	GCNGC	4 cut(s)	108, 371, 677, 780
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	4 cut(s)	108, 371, 677, 780
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	4 cut(s)	24, 71, 80, 776
Hin1II	CATG	2 cut(s)	426, 496
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	3 cut(s)	76, 626, 772
HpaII	CCGG	4 cut(s)	24, 71, 80, 776
HphI	GGTGA	6 cut(s)	85, 125, 231, 367, 519, 546
Hpy166II	GTNNAC	2 cut(s)	586, 759
Hpy188I	TCNGA	2 cut(s)	661, 708
Hpy8I	GTNNAC	2 cut(s)	586, 759
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	3 cut(s)	177, 534, 661
HpyCH4III	ACNGT	3 cut(s)	92, 143, 321
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	5 cut(s)	55, 184, 343, 580, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	2 cut(s)	471, 606
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	426, 496
Kzo9I	GATC	4 cut(s)	19, 28, 99, 817
LmnI	GCTCC	2 cut(s)	526, 673
Lsp1109I	GCAGC	2 cut(s)	663, 766
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	5 cut(s)	32, 86, 113, 227, 458
MalI	GATC	4 cut(s)	21, 30, 101, 819
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	4 cut(s)	19, 28, 99, 817
MboII	GAAGA	1 cut(s)	646
MfeI	CAATTG	3 cut(s)	37, 338, 767
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	8 cut(s)	37, 173, 290, 338, 575, 662, 767, 856
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	731
MseI	TTAA	3 cut(s)	267, 686, 855
MslI	CAYNNNNRTG	3 cut(s)	456, 869, 871
MspI	CCGG	4 cut(s)	24, 71, 80, 776
MspR9I	CCNGG	3 cut(s)	12, 24, 25
MunI	CAATTG	3 cut(s)	37, 338, 767
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	788
NciI	CCSGG	2 cut(s)	24, 25
NcoI	CCATGG	1 cut(s)	422
NdeII	GATC	4 cut(s)	19, 28, 99, 817
NlaIII	CATG	2 cut(s)	426, 496
NmuCI	GTSAC	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PfeI	GAWTC	2 cut(s)	626, 772
PkrI	GCNGC	4 cut(s)	109, 372, 678, 781
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	99
RseI	CAYNNNNRTG	3 cut(s)	456, 869, 871
SaqAI	TTAA	3 cut(s)	267, 686, 855
SatI	GCNGC	4 cut(s)	108, 371, 677, 780
Sau3AI	GATC	4 cut(s)	19, 28, 99, 817
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	12, 24, 25
SfaNI	GCATC	1 cut(s)	609
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	456, 869, 871
Sse9I	AATT	8 cut(s)	37, 173, 290, 338, 575, 662, 767, 856
SsiI	CCGC	5 cut(s)	83, 108, 371, 679, 749
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	10, 22, 23
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	92, 143, 321
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	196
TasI	AATT	8 cut(s)	37, 173, 290, 338, 575, 662, 767, 856
TauI	GCSGC	2 cut(s)	110, 373
TfiI	GAWTC	2 cut(s)	626, 772
Tru1I	TTAA	3 cut(s)	267, 686, 855
Tru9I	TTAA	3 cut(s)	267, 686, 855
TscAI	CASTG	3 cut(s)	97, 735, 873
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	676, 779
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	643, 684, 783
TspMI	CCCGGG	1 cut(s)	23
TspRI	CASTG	3 cut(s)	97, 735, 873
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	662
XmaI	CCCGGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.