Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395177.1

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1241

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

gtgagtccggcggggtacggcggtgggatctccggtacttgttacctcacacattcgtctcaccctcacggtagccctagctacctacgaccttcttcccaatttccattgcaaccgagttactcaccaccaccttcccaaacaatcattgatgggtatgttttccctcatcaatttccctgtgtttctcagactcacgcacagttcagccctcctcctcaattgcaacccatttatcctactgctcaacatccgctcaccaccactcctcaaagcccatcaatccctcattctaacccaaatccatggatatattccccgatttcacaaagccattcctgtgaccctcattctcagttcgtctccaccaaacccatgactacaacacctatttaccattctgctcttttaccttccgtttgtgagaaaccacattcaccgccacaaggttctggcaaattcaagttcacaaacagcacacagaagcgaagttgtgcttcattatcacttattcctgctaataatggtattatttctaaaacccctgtggataatgacttgaatttgtctcacactgatgtgatattgggatttaatgataatactagtatggataatgttgtgggttttgtgtgtgatactaaattatatggtattgatgagaagttagatactggggatggagggaagtctgatgagatggctaaggtgaatagtggggatagcagagagttcaatgagcttgagagtgtgacctcaggtgcaaatccggtggcaataaagaaggggattgataagattgtacaggcattggtaagtgaactagaaaacaaatctaagcttgttaagggtcatgatgatgttacagctgctacatctatgtctgctgggagtgatgtgcaacttggaacaatgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

306

Amino Acids

32.67

Weight (kDa)

6.09

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	4 cut(s)	11, 21, 254, 440
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	458, 562
AfaI	GTAC	3 cut(s)	17, 37, 804
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	463, 562, 736
AhlI	ACTAGT	1 cut(s)	605
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	4 cut(s)	81, 742, 841, 869
AluI	AGCT	4 cut(s)	81, 742, 841, 869
Alw26I	GTCTC	3 cut(s)	63, 367, 573
AlwI	GGATC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	2 cut(s)	458, 562
AsuHPI	GGTGA	5 cut(s)	53, 117, 250, 429, 721
AxyI	CCTNAGG	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BbvI	GCAGC	1 cut(s)	856
BccI	CCATC	4 cut(s)	146, 286, 674, 694
BceAI	ACGGC	1 cut(s)	34
BcoDI	GTCTC	3 cut(s)	63, 367, 573
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	3 cut(s)	78, 606, 824
BisI	GCNGC	1 cut(s)	870
BlsI	GCNGC	1 cut(s)	871
BmrI	ACTGGG	1 cut(s)	684
BmuI	ACTGGG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	2 cut(s)	32, 769
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	679
Bse21I	CCTNAGG	1 cut(s)	757
Bse3DI	GCAATG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	250, 685
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	203, 368, 771
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	3 cut(s)	204, 207, 258
BseXI	GCAGC	1 cut(s)	856
BseYI	CCCAGC	1 cut(s)	887
BsiSI	CCGG	3 cut(s)	8, 33, 770
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	3 cut(s)	63, 367, 573
BsmBI	CGTCTC	2 cut(s)	63, 367
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	4 cut(s)	11, 21, 254, 440
BspCNI	CTCAG	3 cut(s)	202, 367, 770
BspHI	TCATGA	1 cut(s)	853
BspPI	GGATC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	71, 204
BstAUI	TGTACA	1 cut(s)	802
BstDEI	CTNAG	5 cut(s)	189, 354, 705, 757, 837
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	250, 685
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	3 cut(s)	63, 367, 573
BstMBI	GATC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	856
BstX2I	RGATCY	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	250, 685
BtsIMutI	CAGTG	1 cut(s)	573
CciI	TCATGA	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	16, 36, 803
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	3 cut(s)	306, 376, 854
CviJI	RGCY	9 cut(s)	75, 81, 210, 276, 333, 704, 742, 841, 869
CviKI_1	RGCY	9 cut(s)	75, 81, 210, 276, 333, 704, 742, 841, 869
CviQI	GTAC	3 cut(s)	16, 36, 803
DdeI	CTNAG	5 cut(s)	189, 354, 705, 757, 837
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	2 cut(s)	63, 367
FaeI	CATG	3 cut(s)	309, 379, 857
FaiI	YATR	9 cut(s)	159, 307, 313, 377, 611, 649, 651, 855, 881
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FatI	CATG	3 cut(s)	305, 375, 853
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	870
FokI	GGATG	2 cut(s)	237, 692
Fsp4HI	GCNGC	1 cut(s)	870
FspBI	CTAG	3 cut(s)	78, 606, 824
GluI	GCNGC	1 cut(s)	870
GsaI	CCCAGC	1 cut(s)	891
HapII	CCGG	3 cut(s)	8, 33, 770
Hin1II	CATG	3 cut(s)	309, 379, 857
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	2 cut(s)	4, 193
HpaII	CCGG	3 cut(s)	8, 33, 770
HphI	GGTGA	5 cut(s)	53, 117, 250, 429, 721
Hpy166II	GTNNAC	2 cut(s)	468, 821
Hpy188I	TCNGA	2 cut(s)	192, 694
Hpy188III	TCNNGA	1 cut(s)	854
Hpy8I	GTNNAC	2 cut(s)	468, 821
HpyAV	CCTTC	4 cut(s)	102, 144, 423, 778
HpyCH4III	ACNGT	2 cut(s)	71, 204
HpyCH4V	TGCA	4 cut(s)	112, 226, 764, 901
HpyF3I	CTNAG	5 cut(s)	189, 354, 705, 757, 837
Hsp92II	CATG	3 cut(s)	309, 379, 857
Kzo9I	GATC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	856
MaeI	CTAG	3 cut(s)	78, 606, 824
MaeIII	GTNAC	5 cut(s)	41, 119, 341, 751, 862
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	6 cut(s)	101, 173, 221, 458, 562, 644
MlyI	GAGTC	2 cut(s)	13, 187
MseI	TTAA	2 cut(s)	594, 846
MslI	CAYNNNNRTG	4 cut(s)	339, 576, 578, 858
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	3 cut(s)	8, 33, 770
MunI	CAATTG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	309, 379, 857
NmuCI	GTSAC	2 cut(s)	341, 751
OliI	CACNNNNGTG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	853
PkrI	GCNGC	1 cut(s)	871
PleI	GAGTC	2 cut(s)	12, 187
PpsI	GAGTC	2 cut(s)	12, 187
PspFI	CCCAGC	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	3 cut(s)	17, 37, 804
RsaNI	GTAC	3 cut(s)	16, 36, 803
RseI	CAYNNNNRTG	4 cut(s)	339, 576, 578, 858
SaqAI	TTAA	2 cut(s)	594, 846
SatI	GCNGC	1 cut(s)	870
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	2 cut(s)	13, 187
SmiMI	CAYNNNNRTG	4 cut(s)	339, 576, 578, 858
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	6 cut(s)	101, 173, 221, 458, 562, 644
SsiI	CCGC	4 cut(s)	11, 21, 254, 440
SspMI	CTAG	3 cut(s)	78, 606, 824
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	71, 204
TasI	AATT	6 cut(s)	101, 173, 221, 458, 562, 644
TatI	WGTACW	1 cut(s)	802
Tru1I	TTAA	2 cut(s)	594, 846
Tru9I	TTAA	2 cut(s)	594, 846
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	341, 751
TseI	GCWGC	1 cut(s)	869
Tsp45I	GTSAC	2 cut(s)	341, 751
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	580
XapI	RAATTY	2 cut(s)	458, 562
XspI	CTAG	3 cut(s)	78, 606, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.