Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Forward (+)

8907377 .. 8908456

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCATACCATGGCTACGATCCCGGGGATCGTAACAACTGGTATCAGAGCCCGCACCTGGGCCTGTCTCCGGTGCGTCCGGCGGTGTACGGCAGTGGGATCTACGGCGGTTGTTACAACACGCATACTTCTCACCCTTACGGTAGCCCTAGCTACCCACCACCTCCTTCCCAATTCCCATTGCAACCAAGCTACCCTCCACCACCACCACCTTCCCAAACCATCATCAATGGCCACTTACTCCCTCATCAATTTCCATCAACCCACTCTTACCATTCACCTCGTTTTGACCCAATTCCCTGGATATACCCATCGATTTCACAACGCCATTCCTATGACCCATCAGTTACCAGTGTTCATTCTCAGTTCATCTTCACCAAAACCATGAATCCACCACCTATTTACCATTCTGCTCCTTCATTTCCAACCTTTCAGTCACCCTCAATCTCCACTTTTGTGCCCCAATTTACTGATCTCAAACCTCTTTCTCTCCATAGCAAACCGTTTCGGGGTTTCAATCGTAGAGTCGCCATGGGTGCAAAAGCTAGAGTGGCCAAAAAGACTCGAAACCCAGATCTGCTCCGTGAGGTGGTCTGCCGTCTTCCAGAAACACCTCGTCGTCTTCAGTTTTGGCAACGGATGATACATACCACTCTACTCCCAATTACTTCACCTAAAGTTGCACATCAGGTGTTTGATGAAAAGCCGGCGATGGAGACCCTAGCACCAACTACAGAAGATGAGGAGATTATCAAGGTTGTGGTTGCCGGAACCATTCCTTCATACTCAGTCGAGTCAAAGCTCGGCGATTGCAAGAGGGTTGCTTCTATTAGGTGCAAGTCCTTAGAGGGATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

286

Amino Acids

32.15

Weight (kDa)

9.39

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 83, 108
AclWI	GGATC	3 cut(s)	14, 36, 107
AcoI	YGGCCR	2 cut(s)	232, 552
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	5 cut(s)	58, 59, 70, 509, 589
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	57, 299
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	153, 192, 545, 802
AluI	AGCT	4 cut(s)	153, 192, 545, 802
Alw26I	GTCTC	2 cut(s)	72, 710
AlwI	GGATC	3 cut(s)	14, 36, 107
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	3 cut(s)	61, 232, 552
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	24, 25
AsuHPI	GGTGA	5 cut(s)	125, 270, 367, 429, 663
AvaI	CYCGRG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	2 cut(s)	234, 554
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	593, 614
BccI	CCATC	5 cut(s)	230, 265, 319, 349, 706
BceAI	ACGGC	3 cut(s)	106, 121, 582
BciT130I	CCWGG	2 cut(s)	59, 301
BcnI	CCSGG	2 cut(s)	24, 25
BcoDI	GTCTC	2 cut(s)	72, 710
BfaI	CTAG	3 cut(s)	150, 546, 722
BfmI	CTRYAG	1 cut(s)	732
BglII	AGATCT	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	24, 25, 59, 301
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	4 cut(s)	24, 25, 59, 301
BpiI	GAAGAC	2 cut(s)	593, 614
BpuMI	CCSGG	2 cut(s)	24, 25
Bsa29I	ATCGAT	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	6 cut(s)	10, 23, 24, 58, 299, 531
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 59, 70, 509, 589
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	44, 351
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	59, 301
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	6 cut(s)	10, 23, 24, 58, 299, 531
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	5 cut(s)	58, 59, 70, 509, 589
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	377, 801
BseNI	ACTGG	2 cut(s)	44, 351
BseRI	GAGGAG	1 cut(s)	758
BseSI	GKGCMC	1 cut(s)	462
BshFI	GGCC	3 cut(s)	63, 234, 554
BshVI	ATCGAT	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	24, 71, 80, 707, 768
BslI	CCNNNNNNNGG	5 cut(s)	58, 59, 70, 509, 589
BsmAI	GTCTC	2 cut(s)	72, 710
BsnI	GGCC	3 cut(s)	63, 234, 554
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	53, 462
Bsp143I	GATC	5 cut(s)	19, 28, 99, 472, 574
Bsp19I	CCATGG	2 cut(s)	10, 531
BspACI	CCGC	3 cut(s)	53, 83, 108
BspANI	GGCC	3 cut(s)	63, 234, 554
BspCNI	CTCAG	2 cut(s)	376, 800
BspDI	ATCGAT	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	772
BspPI	GGATC	3 cut(s)	14, 36, 107
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	44, 351
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	6 cut(s)	10, 23, 24, 58, 299, 531
BssMI	GATC	5 cut(s)	19, 28, 99, 472, 574
BssT1I	CCWWGG	2 cut(s)	10, 531
Bst2UI	CCWGG	2 cut(s)	59, 301
Bst4CI	ACNGT	2 cut(s)	143, 504
BstC8I	GCNNGC	2 cut(s)	53, 708
BstDEI	CTNAG	3 cut(s)	363, 787, 844
BstDSI	CCRYGG	2 cut(s)	10, 531
BstF5I	GGATG	1 cut(s)	645
BstKTI	GATC	5 cut(s)	22, 31, 102, 475, 577
BstMAI	GTCTC	2 cut(s)	72, 710
BstMBI	GATC	5 cut(s)	19, 28, 99, 472, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 551
BstNI	CCWGG	2 cut(s)	59, 301
BstSCI	CCNGG	4 cut(s)	22, 23, 57, 299
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	593, 614
BstX2I	RGATCY	2 cut(s)	99, 574
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	2 cut(s)	99, 574
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	63, 234, 554
BsuTUI	ATCGAT	1 cut(s)	314
BtgI	CCRYGG	2 cut(s)	10, 531
BtgZI	GCGATG	1 cut(s)	725
BtsCI	GGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 358
Cac8I	GCNNGC	2 cut(s)	53, 708
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	11, 385, 532
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	363, 787, 844
DpnI	GATC	5 cut(s)	21, 30, 101, 474, 576
DpnII	GATC	5 cut(s)	19, 28, 99, 472, 574
EaeI	YGGCCR	2 cut(s)	232, 552
Eco130I	CCWWGG	2 cut(s)	10, 531
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	57, 299
EcoT14I	CCWWGG	2 cut(s)	10, 531
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	10, 531
FaeI	CATG	3 cut(s)	14, 388, 535
FatI	CATG	3 cut(s)	10, 384, 531
FauI	CCCGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	652
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	3 cut(s)	150, 546, 722
HaeIII	GGCC	3 cut(s)	63, 234, 554
HapII	CCGG	5 cut(s)	24, 71, 80, 707, 768
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	14, 388, 535
HinfI	GANTC	4 cut(s)	388, 525, 562, 794
HpaII	CCGG	5 cut(s)	24, 71, 80, 707, 768
HphI	GGTGA	5 cut(s)	125, 270, 367, 429, 663
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	4 cut(s)	177, 222, 426, 789
HpyCH4III	ACNGT	2 cut(s)	143, 504
HpyCH4V	TGCA	5 cut(s)	184, 539, 683, 813, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 551
HpyF3I	CTNAG	3 cut(s)	363, 787, 844
Hsp92II	CATG	3 cut(s)	14, 388, 535
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Kzo9I	GATC	5 cut(s)	19, 28, 99, 472, 574
LmnI	GCTCC	2 cut(s)	418, 585
MaeI	CTAG	3 cut(s)	150, 546, 722
MaeIII	GTNAC	4 cut(s)	32, 113, 346, 435
MalI	GATC	5 cut(s)	21, 30, 101, 474, 576
MboI	GATC	5 cut(s)	19, 28, 99, 472, 574
MboII	GAAGA	4 cut(s)	364, 593, 614, 749
MflI	RGATCY	2 cut(s)	99, 574
MhlI	GDGCHC	2 cut(s)	53, 462
MlsI	TGGCCA	2 cut(s)	234, 554
MluCI	AATT	5 cut(s)	173, 251, 294, 464, 663
MluNI	TGGCCA	2 cut(s)	234, 554
MlyI	GAGTC	3 cut(s)	534, 556, 803
MmeI	TCCRAC	1 cut(s)	449
Mox20I	TGGCCA	2 cut(s)	234, 554
MroNI	GCCGGC	1 cut(s)	706
MscI	TGGCCA	2 cut(s)	234, 554
MslI	CAYNNNNRTG	2 cut(s)	333, 455
Msp20I	TGGCCA	2 cut(s)	234, 554
MspI	CCGG	5 cut(s)	24, 71, 80, 707, 768
MspR9I	CCNGG	4 cut(s)	24, 25, 59, 301
MvaI	CCWGG	2 cut(s)	59, 301
MwoI	GCNNNNNNNGC	2 cut(s)	536, 551
NaeI	GCCGGC	1 cut(s)	708
NciI	CCSGG	2 cut(s)	24, 25
NcoI	CCATGG	2 cut(s)	10, 531
NdeII	GATC	5 cut(s)	19, 28, 99, 472, 574
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	3 cut(s)	14, 388, 535
NlaIV	GGNNCC	1 cut(s)	772
NmeAIII	GCCGAG	1 cut(s)	783
NmuCI	GTSAC	1 cut(s)	435
OliI	CACNNNNGTG	1 cut(s)	455
PdiI	GCCGGC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	388
PleI	GAGTC	3 cut(s)	533, 556, 802
PpsI	GAGTC	3 cut(s)	533, 556, 802
Psp6I	CCWGG	2 cut(s)	57, 299
PspGI	CCWGG	2 cut(s)	57, 299
PspN4I	GGNNCC	1 cut(s)	772
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	99, 574
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	333, 455
Sau3AI	GATC	5 cut(s)	19, 28, 99, 472, 574
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	534, 556, 803
ScrFI	CCNGG	4 cut(s)	24, 25, 59, 301
SduI	GDGCHC	2 cut(s)	53, 462
SfcI	CTRYAG	1 cut(s)	732
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	2 cut(s)	333, 455
Sse9I	AATT	5 cut(s)	173, 251, 294, 464, 663
SsiI	CCGC	3 cut(s)	53, 83, 108
SspMI	CTAG	3 cut(s)	150, 546, 722
StyD4I	CCNGG	4 cut(s)	22, 23, 57, 299
StyI	CCWWGG	2 cut(s)	10, 531
TaaI	ACNGT	2 cut(s)	143, 504
TaqI	TCGA	3 cut(s)	314, 565, 792
TasI	AATT	5 cut(s)	173, 251, 294, 464, 663
TfiI	GAWTC	1 cut(s)	388
TscAI	CASTG	2 cut(s)	100, 358
TseFI	GTSAC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	6 cut(s)	347, 358, 401, 408, 714, 771
TspGWI	ACGGA	2 cut(s)	572, 652
TspMI	CCCGGG	1 cut(s)	23
TspRI	CASTG	2 cut(s)	100, 358
XmaI	CCCGGG	1 cut(s)	23
XspI	CTAG	3 cut(s)	150, 546, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.