Rroxscaffold_2G00141110

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006940
Physical Location & Seq
Forward (+)
79454034 .. 79456036
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141110.1

Sequence Viewer

Length: 282 bp
ATGGCGGCGAAAGTGAGAGTTGCCAAAGAGACCAAAAACTCATTTATGCTCCATGGTGTGGGTAAGTACTCGAGGTCCAAGATGTACCACAAGCGTGGTCTTTGGGCCATCAAGGCCAAAAATGGCGGTGCCTTCCCCCGTCACAACTCTAAGTTTATGTCCCCTGCAGAAATAGACTTGAAATCTACAAAGAATGACAGCAATGGTTCTCTTTTCCGGAAAGACATTGGCAAGATTCATCATGTTGCTTCAATAATGGTTGCAAGAGATATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

93

Amino Acids

10.38

Weight (kDa)

10.56

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e_N PF03868 5 - 51 8.9e-11 Ribosomal protein L6, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 2 cut(s) 5, 126
AfaI GTAC 2 cut(s) 68, 86
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 181, 252
AleI CACNNNNGTG 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 2 cut(s) 105, 114
AspS9I GGNCC 2 cut(s) 75, 105
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 128
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 75, 105
BmiI GGNNCC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 208
BshFI GGCC 2 cut(s) 107, 116
BshNI GGYRCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 107, 116
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 2 cut(s) 5, 126
BspANI GGCC 2 cut(s) 107, 116
BspEI TCCGGA 1 cut(s) 216
BspHI TCATGA 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 2 cut(s) 107, 116
BtgI CCRYGG 1 cut(s) 52
CciI TCATGA 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 75, 105
Csp6I GTAC 2 cut(s) 67, 85
CviAII CATG 3 cut(s) 53, 242, 279
CviJI RGCY 3 cut(s) 107, 116, 275
CviKI_1 RGCY 3 cut(s) 107, 116, 275
CviQI GTAC 2 cut(s) 67, 85
DdeI CTNAG 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 3 cut(s) 56, 245, 282
FaiI YATR 6 cut(s) 47, 54, 158, 243, 272, 280
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 52, 241, 278
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 107, 116
HapII CCGG 1 cut(s) 217
Hin1II CATG 3 cut(s) 56, 245, 282
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 217, 279
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 167, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 56, 245, 282
Kpn2I TCCGGA 1 cut(s) 216
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 177, 230
MaeIII GTNAC 1 cut(s) 140
MnlI CCTC 1 cut(s) 66
MroI TCCGGA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 52
NlaIII CATG 3 cut(s) 56, 245, 282
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 70
PagI TCATGA 1 cut(s) 278
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 75, 105
PspXI VCTCGAGB 1 cut(s) 70
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 2 cut(s) 68, 86
RsaNI GTAC 2 cut(s) 67, 85
RseI CAYNNNNRTG 1 cut(s) 93
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 75, 105
ScaI AGTACT 1 cut(s) 68
SetI ASST 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 165
SfiI GGCCNNNNNGGCC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SsiI CCGC 2 cut(s) 5, 126
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 1 cut(s) 71
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 235
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 227, 267
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 75
XhoI CTCGAG 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.