Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009422.1

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

5275 .. 6378

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009422.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgaatccaccacctatttaccattctgctccttcatttccaacctttcagtcacccttaatctccacttttgtgccccaactccaatttactgatctcaaacctctttctctccatagcaaaccgtttcggggtttcaatagtagagtcgccatgggtacaaaagctagagttgccaaaaagactcgaaacccagatctgctccgtgatgtgggtaagtactcgaggtctaagaggtgccacaagcgcggtctttgggccatcaaggccaaaaacggcgatgtatttccatgccacaacaccaaggcggcagttgagattatgaaggagattcttcagcaaattgtgggtctaaaacctccattcgatatatcaaaatcgacggcggtgcaattcagaagtctgccgtctttcggaaacacctcgtcgtcttcagtttcagcaacggatgatacataccactctactcccacacaagccccaattacttcacctaaagttgcacatcaagtgtttgatgaaaagccggcgatggagaccctagcaccaactacagaagatgaggagattatcaaggttgtggttgccggaaccattccttcatactcagtcgagtcaaagctcggcgattgcaagagggctgcttctattaggtgcaagtccttagagggatttgattatgggtcaaatttgggtcaatgctgtgaaatgccagttggatctgtcaccgttcctgttgggattgttgggcctatcatttttgatggaagagagttgtcaggccctatggccaccactgaaggttgccatatggaagacctcgctaagagagcagctgagttcaagttcttcatgaaagaccctgacaattatgaaaccaatttccatctcgaaaaggcaaaaaaggggccaaaaacacatgaaattgggcaccaagcatccattatgtcggttagtggcattgagaatgccaaagaagaggaccctacatctattcttggagttaagaattcatcaaagattccctccctagccattgacgcagacaaagaagcctgtaaccatcatcccttgagaaaagttgtgatgacagtggaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

367

Amino Acids

40.13

Weight (kDa)

8.64

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	237, 930
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	249, 308, 386
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	688, 1009
AcuI	CTGAAG	3 cut(s)	320, 417, 819
AfaI	GTAC	2 cut(s)	160, 221
AfiI	CCNNNNNNNGG	3 cut(s)	131, 211, 413
AgsI	TTSAA	2 cut(s)	139, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	167, 622, 836
AluI	AGCT	3 cut(s)	167, 622, 836
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	6 cut(s)	258, 267, 749, 781, 789, 908
ApeKI	GCWGC	2 cut(s)	641, 833
ApoI	RAATTY	2 cut(s)	688, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	5 cut(s)	258, 749, 782, 908, 982
AsuHPI	GGTGA	3 cut(s)	45, 483, 718
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	982
BaeGI	GKGCMC	2 cut(s)	78, 933
BalI	TGGCCA	1 cut(s)	791
BanI	GGYRCC	2 cut(s)	237, 930
BbsI	GAAGAC	2 cut(s)	423, 822
BbvI	GCAGC	2 cut(s)	628, 845
BccI	CCATC	5 cut(s)	269, 526, 758, 894, 1071
BceAI	ACGGC	3 cut(s)	292, 391, 399
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	168, 542, 1031
BfmI	CTRYAG	1 cut(s)	552
BglI	GCCNNNNNGGC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	309, 642, 834
BlsI	GCNGC	3 cut(s)	310, 643, 835
BmcAI	AGTACT	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	982
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	5 cut(s)	258, 749, 782, 908, 982
BmiI	GGNNCC	5 cut(s)	239, 592, 909, 932, 984
BmsI	GCATC	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	423, 822
BpuEI	CTTGAG	1 cut(s)	1093
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	153, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 211, 413
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	713
BseDI	CCNNGG	2 cut(s)	153, 303
BseGI	GGATG	3 cut(s)	454, 938, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	131, 211, 413
BseMII	CTCAG	2 cut(s)	621, 828
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	1 cut(s)	578
BseSI	GKGCMC	2 cut(s)	78, 933
BseXI	GCAGC	2 cut(s)	628, 845
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	6 cut(s)	260, 269, 751, 783, 791, 910
BshNI	GGYRCC	2 cut(s)	237, 930
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	527, 588
BslI	CCNNNNNNNGG	3 cut(s)	131, 211, 413
BsmAI	GTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	973
BsnI	GGCC	6 cut(s)	260, 269, 751, 783, 791, 910
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	78, 933
Bsp143I	GATC	3 cut(s)	94, 196, 719
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	249, 308, 386
BspANI	GGCC	6 cut(s)	260, 269, 751, 783, 791, 910
BspCNI	CTCAG	2 cut(s)	620, 829
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	5 cut(s)	239, 592, 909, 932, 984
BspPI	GGATC	1 cut(s)	727
BspT107I	GGYRCC	2 cut(s)	237, 930
BspTNI	GGTCTC	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	153, 303
BssMI	GATC	3 cut(s)	94, 196, 719
BssT1I	CCWWGG	2 cut(s)	153, 303
Bst4CI	ACNGT	3 cut(s)	126, 730, 1093
Bst6I	CTCTTC	2 cut(s)	763, 972
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	5 cut(s)	231, 607, 664, 825, 837
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	454, 938, 1066
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	97, 199, 722
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	94, 196, 719
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 246, 266, 830, 1040
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	2 cut(s)	78, 933
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	628, 845
BstV2I	GAAGAC	2 cut(s)	423, 822
BstX2I	RGATCY	2 cut(s)	196, 719
BstYI	RGATCY	2 cut(s)	196, 719
BsuRI	GGCC	6 cut(s)	260, 269, 751, 783, 791, 910
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	2 cut(s)	294, 545
BtsCI	GGATG	3 cut(s)	454, 938, 1066
BtsIMutI	CAGTG	2 cut(s)	795, 1098
Cac8I	GCNNGC	1 cut(s)	528
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	258, 749, 782, 908, 982
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	2 cut(s)	159, 220
CviAII	CATG	4 cut(s)	154, 291, 853, 920
CviQI	GTAC	2 cut(s)	159, 220
DdeI	CTNAG	5 cut(s)	231, 607, 664, 825, 837
DpnI	GATC	3 cut(s)	96, 198, 721
DpnII	GATC	3 cut(s)	94, 196, 719
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	2 cut(s)	763, 972
EarI	CTCTTC	2 cut(s)	763, 972
Eco130I	CCWWGG	2 cut(s)	153, 303
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	982
Eco57I	CTGAAG	3 cut(s)	320, 417, 819
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	2 cut(s)	782, 982
EcoRI	GAATTC	1 cut(s)	1009
EcoT14I	CCWWGG	2 cut(s)	153, 303
ErhI	CCWWGG	2 cut(s)	153, 303
FaeI	CATG	4 cut(s)	157, 294, 856, 923
FatI	CATG	4 cut(s)	153, 290, 852, 919
FauNDI	CATATG	1 cut(s)	810
Fnu4HI	GCNGC	3 cut(s)	309, 642, 834
FokI	GGATG	3 cut(s)	461, 925, 1053
Fsp4HI	GCNGC	3 cut(s)	309, 642, 834
FspBI	CTAG	3 cut(s)	168, 542, 1031
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	3 cut(s)	309, 642, 834
HaeIII	GGCC	6 cut(s)	260, 269, 751, 783, 791, 910
HapII	CCGG	2 cut(s)	527, 588
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	157, 294, 856, 923
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	6 cut(s)	4, 147, 184, 331, 614, 1021
HpaII	CCGG	2 cut(s)	527, 588
HphI	GGTGA	3 cut(s)	45, 483, 718
Hpy188I	TCNGA	2 cut(s)	398, 416
Hpy188III	TCNNGA	2 cut(s)	853, 890
Hpy99I	CGWCG	2 cut(s)	385, 430
HpyAV	CCTTC	4 cut(s)	42, 319, 609, 794
HpyCH4III	ACNGT	3 cut(s)	126, 730, 1093
HpyCH4V	TGCA	4 cut(s)	391, 503, 633, 657
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 246, 266, 830, 1040
HpyF3I	CTNAG	5 cut(s)	231, 607, 664, 825, 837
Hsp92II	CATG	4 cut(s)	157, 294, 856, 923
HspAI	GCGC	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	526
KroNI	GCCGGC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	94, 196, 719
LmnI	GCTCC	2 cut(s)	34, 207
LpnPI	CCDG	8 cut(s)	207, 540, 601, 726, 747, 765, 876, 1069
Lsp1109I	GCAGC	2 cut(s)	628, 845
LweI	GCATC	1 cut(s)	947
MaeI	CTAG	3 cut(s)	168, 542, 1031
MaeIII	GTNAC	3 cut(s)	51, 724, 1058
MalI	GATC	3 cut(s)	96, 198, 721
MboI	GATC	3 cut(s)	94, 196, 719
MboII	GAAGA	7 cut(s)	326, 423, 569, 780, 827, 841, 989
MflI	RGATCY	2 cut(s)	196, 719
MhlI	GDGCHC	2 cut(s)	78, 933
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	9 cut(s)	86, 342, 392, 483, 688, 868, 880, 924, 1009
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	3 cut(s)	156, 178, 623
MmeI	TCCRAC	2 cut(s)	65, 697
Mox20I	TGGCCA	1 cut(s)	791
MroNI	GCCGGC	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	2 cut(s)	59, 1005
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	2 cut(s)	527, 588
Mva1269I	GAATGC	1 cut(s)	973
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	173, 246, 266, 830, 1040
NaeI	GCCGGC	1 cut(s)	528
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	3 cut(s)	94, 196, 719
NgoMIV	GCCGGC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	157, 294, 856, 923
NlaIV	GGNNCC	5 cut(s)	239, 592, 909, 932, 984
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	51, 724
OliI	CACNNNNGTG	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	223
PagI	TCATGA	1 cut(s)	852
PctI	GAATGC	1 cut(s)	973
PdiI	GCCGGC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	4, 331, 1021
PkrI	GCNGC	3 cut(s)	310, 643, 835
PleI	GAGTC	3 cut(s)	155, 178, 622
PpsI	GAGTC	3 cut(s)	155, 178, 622
PpuMI	RGGWCCY	1 cut(s)	982
Psp5II	RGGWCCY	1 cut(s)	982
PspN4I	GGNNCC	5 cut(s)	239, 592, 909, 932, 984
PspPI	GGNCC	5 cut(s)	258, 749, 782, 908, 982
PspPPI	RGGWCCY	1 cut(s)	982
PspXI	VCTCGAGB	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	196, 719
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	2 cut(s)	160, 221
RsaNI	GTAC	2 cut(s)	159, 220
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	59, 1005
SatI	GCNGC	3 cut(s)	309, 642, 834
Sau3AI	GATC	3 cut(s)	94, 196, 719
Sau96I	GGNCC	5 cut(s)	258, 749, 782, 908, 982
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	3 cut(s)	156, 178, 623
SduI	GDGCHC	2 cut(s)	78, 933
SfaNI	GCATC	1 cut(s)	947
SfcI	CTRYAG	1 cut(s)	552
SfiI	GGCCNNNNNGGCC	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	982
SlaI	CTCGAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	223, 1072
SmoI	CTYRAG	2 cut(s)	223, 1072
Sse9I	AATT	9 cut(s)	86, 342, 392, 483, 688, 868, 880, 924, 1009
SsiI	CCGC	3 cut(s)	249, 308, 386
SspMI	CTAG	3 cut(s)	168, 542, 1031
StyI	CCWWGG	2 cut(s)	153, 303
TaaI	ACNGT	3 cut(s)	126, 730, 1093
TaqI	TCGA	6 cut(s)	187, 224, 366, 380, 612, 891
TasI	AATT	9 cut(s)	86, 342, 392, 483, 688, 868, 880, 924, 1009
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	3 cut(s)	4, 331, 1021
Tru1I	TTAA	2 cut(s)	59, 1005
Tru9I	TTAA	2 cut(s)	59, 1005
TscAI	CASTG	2 cut(s)	802, 1098
TseFI	GTSAC	2 cut(s)	51, 724
TseI	GCWGC	2 cut(s)	641, 833
Tsp45I	GTSAC	2 cut(s)	51, 724
TspGWI	ACGGA	2 cut(s)	194, 461
TspRI	CASTG	2 cut(s)	802, 1098
VpaK11BI	GGWCC	1 cut(s)	982
XapI	RAATTY	2 cut(s)	688, 1009
XhoI	CTCGAG	1 cut(s)	223
XspI	CTAG	3 cut(s)	168, 542, 1031
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.