Rmu_sc0018791.1_g000001

Ribosomal protein L6e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018791.1
OG0006940
Physical Location & Seq
Reverse (-)
1 .. 735
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018791.1_g000001.1.cds

Sequence Viewer

Length: 364 bp
atggcaccaaaagcgagagttccccgaaagacccgaaacccagatctggtccgtggagtgggtaagtactccaggtccaagatgtaccacaagcgcggtctctgggccatcaaggccaaaaatggcggtgccttcccacgtcacgacgccaagccggcggctgaggctccgtcggtgaagcctcccaagttctaccctgctgaggacgtcaagaagcccctggtcaacaagcacaagcccaagcccaccaagctcagggcgagtattactcccgggactgtgttgattatactggctggaaggtttaaggggaagagagttgttttccttaagcagctttcatctgggttgcttcttgttactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

121

Amino Acids

13.37

Weight (kDa)

11.37

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccB1I GGYRCC 2 cut(s) 4, 128
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 96, 126, 158
AcyI GRCGYC 2 cut(s) 147, 207
AfaI GTAC 2 cut(s) 68, 86
AfiI CCNNNNNNNGG 4 cut(s) 46, 58, 202, 255
AflII CTTAAG 1 cut(s) 329
AjiI CACGTC 1 cut(s) 140
AjnI CCWGG 2 cut(s) 71, 219
AluBI AGCT 2 cut(s) 253, 337
AluI AGCT 2 cut(s) 253, 337
Alw26I GTCTC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 105, 114
ApeKI GCWGC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 49, 75, 105
AsuC2I CCSGG 2 cut(s) 273, 274
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 49, 75
BanI GGYRCC 2 cut(s) 4, 128
BbvCI CCTCAGC 2 cut(s) 162, 201
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 73, 221
BcnI CCSGG 2 cut(s) 273, 274
BcoDI GTCTC 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 329
BglI GCCNNNNNGGC 2 cut(s) 113, 155
BglII AGATCT 1 cut(s) 43
BisI GCNGC 2 cut(s) 159, 335
BlsI GCNGC 2 cut(s) 160, 336
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 4 cut(s) 73, 221, 273, 274
Bme18I GGWCC 2 cut(s) 49, 75
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 3 cut(s) 49, 75, 105
BmiI GGNNCC 3 cut(s) 6, 130, 168
BmrFI CCNGG 4 cut(s) 73, 221, 273, 274
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 3 cut(s) 162, 201, 254
BpuMI CCSGG 2 cut(s) 273, 274
BsaHI GRCGYC 2 cut(s) 147, 207
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 52, 219, 272
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 58, 202, 255
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 73, 221
BseDI CCNNGG 3 cut(s) 52, 219, 272
BseLI CCNNNNNNNGG 4 cut(s) 46, 58, 202, 255
BseMII CTCAG 3 cut(s) 153, 192, 268
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 107, 116
BshNI GGYRCC 2 cut(s) 4, 128
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 155, 273
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 46, 58, 202, 255
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 107, 116
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 3 cut(s) 96, 126, 158
BspANI GGCC 2 cut(s) 107, 116
BspCNI CTCAG 3 cut(s) 154, 193, 267
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 6, 130, 168
BspT107I GGYRCC 2 cut(s) 4, 128
BspTI CTTAAG 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 52, 219, 272
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 2 cut(s) 147, 207
Bst2UI CCWGG 2 cut(s) 73, 221
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 2 cut(s) 147, 207
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 162, 201, 254
BstDSI CCRYGG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 5 cut(s) 11, 113, 155, 164, 250
BstNI CCWGG 2 cut(s) 73, 221
BstSCI CCNGG 4 cut(s) 71, 219, 271, 272
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 2 cut(s) 107, 116
BtgI CCRYGG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 49, 75, 105
Cfr9I CCCGGG 1 cut(s) 272
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 67, 85
CviQI GTAC 2 cut(s) 67, 85
DdeI CTNAG 3 cut(s) 162, 201, 254
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 49, 75
Eco88I CYCGRG 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 71, 219
FaiI YATR 1 cut(s) 290
FaqI GGGAC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 159, 335
Fsp4HI GCNGC 2 cut(s) 159, 335
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 159, 335
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 2 cut(s) 107, 116
HapII CCGG 2 cut(s) 155, 273
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 2 cut(s) 147, 207
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HpaII CCGG 2 cut(s) 155, 273
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 143, 211
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 2 cut(s) 149, 175
HpyAV CCTTC 2 cut(s) 142, 294
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 139, 207
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 113, 155, 164, 250
HpyF3I CTNAG 3 cut(s) 162, 201, 254
HpySE526I ACGT 2 cut(s) 139, 207
Hsp92I GRCGYC 2 cut(s) 147, 207
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 346
MaeII ACGT 2 cut(s) 139, 207
MaeIII GTNAC 2 cut(s) 140, 358
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 325
MflI RGATCY 1 cut(s) 43
MnlI CCTC 3 cut(s) 157, 192, 196
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 2 cut(s) 306, 330
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 2 cut(s) 155, 273
MspR9I CCNGG 4 cut(s) 73, 221, 273, 274
MvaI CCWGG 2 cut(s) 73, 221
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 11, 113, 155, 164, 250
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 2 cut(s) 273, 274
NdeII GATC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 154
NlaIV GGNNCC 3 cut(s) 6, 130, 168
NmuCI GTSAC 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 160, 336
Psp6I CCWGG 2 cut(s) 71, 219
PspGI CCWGG 2 cut(s) 71, 219
PspN4I GGNNCC 3 cut(s) 6, 130, 168
PspPI GGNCC 3 cut(s) 49, 75, 105
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 68, 86
RsaNI GTAC 2 cut(s) 67, 85
SaqAI TTAA 2 cut(s) 306, 330
SatI GCNGC 2 cut(s) 159, 335
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 3 cut(s) 49, 75, 105
ScaI AGTACT 1 cut(s) 68
ScrFI CCNGG 4 cut(s) 73, 221, 273, 274
SetI ASST 6 cut(s) 77, 142, 210, 255, 305, 339
SfiI GGCCNNNNNGGCC 1 cut(s) 113
SinI GGWCC 2 cut(s) 49, 75
SmaI CCCGGG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 3 cut(s) 96, 126, 158
StyD4I CCNGG 4 cut(s) 71, 219, 271, 272
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 142, 210
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 306, 330
Tru9I TTAA 2 cut(s) 306, 330
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 2 cut(s) 41, 159
TspMI CCCGGG 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 49, 75
XmaI CCCGGG 1 cut(s) 272
ZraI GACGTC 1 cut(s) 208
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.