Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Forward (+)

41988016 .. 41989664

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAATGTCCTTCAGGGTGGGTGATGATCTATGAATTTGGTGGTGGTGATATAATTTTCACCAGTAGTACATATAAGTGCTTGCCATGGAAGTACATGCTCAAAATGATAGAGCTTCAATGGCTTGTCAATACTCCCCTATTCCCGCAATCGGGCCTCGTTTCCGGTGCGTCCGACGGGTACCGCTGTGGGATCTCCGGTGCTTGTTACCTCACACATTCGTCTCACCCTCACGGTAGCCCTAGCTACCCACCTCCTCCATTTCCATTCCAACCGAGTTACTCACCACCACCACCACCACCTTCCCAAACAATCATTAATGGGTATGTTTTCCCTCATCAATTTCCCCGTGTTTCTCGGACTCATGCACGTCATTGCAACCCATTTATCCTATCGCTCCTCACCACCACTCCTCAAAGTGCATCAATCCCTCATTCTAACCCAAATCCATGGATATATCCTCCGATTTCACAAAGCCATTCCCGTGACCCTCATTCTCGGTTCGTCACCACCACTCCTCAAAGTCCATCAATCCCTCATTCTAACCCAAATCCATGGATCCTTCACCTCCCGTTCGCAAATTGCAAGTTCACAAACAACACACGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.67

Weight (kDa)

8.97

Isoelectric Point (pI)

70.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AciI	CCGC	2 cut(s)	146, 184
AclWI	GGATC	3 cut(s)	200, 553, 566
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	3 cut(s)	70, 95, 182
AfiI	CCNNNNNNNGG	2 cut(s)	151, 152
AgsI	TTSAA	1 cut(s)	119
AjiI	CACGTC	1 cut(s)	371
AluBI	AGCT	3 cut(s)	115, 246, 609
AluI	AGCT	3 cut(s)	115, 246, 609
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	200, 553, 566
AoxI	GGCC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	318
Asp718I	GGTACC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	8 cut(s)	34, 52, 59, 218, 276, 394, 499, 557
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BamHI	GGATCC	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	180
BccI	CCATC	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	182, 560
BmsI	GCATC	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	86, 449, 554
BsaWI	WCCGGW	2 cut(s)	164, 197
BsaXI	ACNNNNNCTCC	4 cut(s)	394, 424, 499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 152
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	86, 449, 554
BseLI	CCNNNNNNNGG	2 cut(s)	151, 152
BseMI	GCAATG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	4 cut(s)	246, 389, 402, 507
BshFI	GGCC	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	165, 198
BslI	CCNNNNNNNGG	2 cut(s)	151, 152
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	27, 192, 558
Bsp19I	CCATGG	3 cut(s)	86, 449, 554
BspACI	CCGC	2 cut(s)	146, 184
BspANI	GGCC	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	182, 560
BspPI	GGATC	3 cut(s)	200, 553, 566
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	86, 449, 554
BssMI	GATC	3 cut(s)	27, 192, 558
BssT1I	CCWWGG	3 cut(s)	86, 449, 554
Bst4CI	ACNGT	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	83
BstDSI	CCRYGG	3 cut(s)	86, 449, 554
BstKTI	GATC	3 cut(s)	30, 195, 561
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	27, 192, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	192, 558
BstXI	CCANNNNNNTGG	2 cut(s)	450, 555
BstYI	RGATCY	2 cut(s)	192, 558
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	3 cut(s)	86, 449, 554
BtrI	CACGTC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	69, 94, 181
CviAII	CATG	5 cut(s)	87, 97, 365, 450, 555
CviJI	RGCY	7 cut(s)	115, 124, 156, 240, 246, 477, 609
CviKI_1	RGCY	7 cut(s)	115, 124, 156, 240, 246, 477, 609
CviQI	GTAC	3 cut(s)	69, 94, 181
DpnI	GATC	3 cut(s)	29, 194, 560
DpnII	GATC	3 cut(s)	27, 192, 558
Eco130I	CCWWGG	3 cut(s)	86, 449, 554
EcoT14I	CCWWGG	3 cut(s)	86, 449, 554
ErhI	CCWWGG	3 cut(s)	86, 449, 554
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	5 cut(s)	90, 100, 368, 453, 558
FatI	CATG	5 cut(s)	86, 96, 364, 449, 554
FauI	CCCGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	165, 198
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	90, 100, 368, 453, 558
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	165, 198
HphI	GGTGA	8 cut(s)	34, 52, 59, 218, 276, 394, 499, 557
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	3 cut(s)	175, 360, 465
Hpy8I	GTNNAC	1 cut(s)	591
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	21, 312, 572
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	368, 378, 422, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	90, 100, 368, 453, 558
KpnI	GGTACC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	27, 192, 558
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	3 cut(s)	76, 178, 211
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	4 cut(s)	206, 278, 485, 505
MalI	GATC	3 cut(s)	29, 194, 560
MboI	GATC	3 cut(s)	27, 192, 558
MflI	RGATCY	2 cut(s)	192, 558
MluCI	AATT	4 cut(s)	35, 54, 341, 580
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	198, 295
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	76, 483
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	165, 198
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	3 cut(s)	86, 449, 554
NdeII	GATC	3 cut(s)	27, 192, 558
NlaIII	CATG	5 cut(s)	90, 100, 368, 453, 558
NlaIV	GGNNCC	2 cut(s)	182, 560
NmuCI	GTSAC	2 cut(s)	485, 505
NspI	RCATGY	1 cut(s)	100
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PshBI	ATTAAT	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	182, 560
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	192, 558
RsaI	GTAC	3 cut(s)	70, 95, 182
RsaNI	GTAC	3 cut(s)	69, 94, 181
RseI	CAYNNNNRTG	2 cut(s)	76, 483
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	27, 192, 558
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	355
SetI	ASST	8 cut(s)	117, 213, 248, 256, 304, 373, 570, 611
SfaNI	GCATC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	76, 483
Sse9I	AATT	4 cut(s)	35, 54, 341, 580
SsiI	CCGC	2 cut(s)	146, 184
SspMI	CTAG	1 cut(s)	243
StyI	CCWWGG	3 cut(s)	86, 449, 554
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	373
TasI	AATT	4 cut(s)	35, 54, 341, 580
TatI	WGTACW	2 cut(s)	68, 93
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	485, 505
Tsp45I	GTSAC	2 cut(s)	485, 505
TspDTI	ATGAA	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.