Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004908.1

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

84229 .. 86162

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004908.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgcctacgatcctggggatcataacaactggtatcatagcccgcaactgggcctgtttccgtagccctagctacccaccacctcctccccattttccattgcaaccgagctacccacctcctcattcacttccattccaaccgagttactcaccatcaccttcccaaataatcattaataggtatgttttccctcatcaatttccatcaacccatacttaccattcaccttattctaacccaaatccctggatctacccatcgatttcctatgaaccatccgttagcagtgttaattcacacttcatctccaccaaaaccatgcgtaccccacctgtttaccattctactccttcaattccaacccttcagtcaccctcagtctccacctttgtgccccaactccaatttactaatccaaaacctcttcctctccatagcaagccgtttcggggtttcagatgtagagtcatcatgggtgcaaaagcaagagttgccaaaaagacccgaaactcagatctgctctttgatgtgggtaagtactcgaggtccaagaggtaccacagtatgatatttgggagttatgtagagagttatggtgaccattccttgagttatagcgatgattctcagagagatgaggggcagtttatgacagattcagatgtagtaattactgaagaagaaagaggcagactgtgcattaaagaagaggcattgctagcgcccaccatgcaagaacattacagcatcaaaaccttagtccctcaggtattcagtaccatcatatctggctctcaatactttgaagcagctttttatggggtgttgtgcgatgtgattaagctctataattatagcttcttgaactctaaagttgaagaagaaaattggccttgtgatgataggattgagacaacggatggggatgccgataaattgtttgacaacaggtcaactggagaaactaatcttgatagtttcctagttgctgctaggttggcttatgattctagtttaattgatatggcatcgcttgacctggcaaatgaagagaaacccgttgagagccaaaaattagctggtctggtatttaagaatgctttggatgctaaagaacaagatagggagtctgatcttgatcagagatggctggcaatagacccttctgcgaaaccccagattaaaatgtgcttcttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N

Protein Analysis

400

Amino Acids

45.28

Weight (kDa)

6.01

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	4, 26, 260
AcuI	CTGAAG	2 cut(s)	353, 699
AfaI	GTAC	4 cut(s)	328, 542, 560, 781
AfiI	CCNNNNNNNGG	3 cut(s)	48, 49, 452
AgsI	TTSAA	4 cut(s)	357, 809, 868, 881
AhdI	GACNNNNNGTC	1 cut(s)	952
AjnI	CCWGG	3 cut(s)	12, 248, 1041
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	6 cut(s)	72, 111, 815, 847, 861, 1082
AluI	AGCT	6 cut(s)	72, 111, 815, 847, 861, 1082
Alw26I	GTCTC	2 cut(s)	388, 908
AlwI	GGATC	3 cut(s)	4, 26, 260
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	51, 893
ApeKI	GCWGC	2 cut(s)	812, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	747, 779
AseI	ATTAAT	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	51, 549
AsuHPI	GGTGA	5 cut(s)	144, 150, 219, 366, 611
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	549
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BanI	GGYRCC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	824, 979
BccI	CCATC	7 cut(s)	163, 214, 268, 286, 791, 917, 1143
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	3 cut(s)	14, 250, 1043
BclI	TGATCA	1 cut(s)	1141
BcoDI	GTCTC	2 cut(s)	388, 908
BfaI	CTAG	5 cut(s)	69, 722, 986, 996, 1014
BfoI	RGCGCY	1 cut(s)	728
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	813, 993
BlsI	GCNGC	2 cut(s)	814, 994
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	3 cut(s)	14, 250, 1043
Bme18I	GGWCC	1 cut(s)	549
BmeRI	GACNNNNNGTC	1 cut(s)	952
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	51, 549
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	3 cut(s)	14, 250, 1043
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	4 cut(s)	759, 919, 1040, 1099
BmtI	GCTAGC	1 cut(s)	725
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	981
BpuEI	CTTGAG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	1140
BsaJI	CCNNGG	2 cut(s)	13, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 49, 452
Bse1I	ACTGG	3 cut(s)	34, 53, 964
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	2 cut(s)	98, 716
Bse8I	GATNNNNATC	1 cut(s)	1140
BseBI	CCWGG	3 cut(s)	14, 250, 1043
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	13, 248
BseGI	GGATG	4 cut(s)	278, 928, 934, 1114
BseJI	GATNNNNATC	1 cut(s)	1140
BseLI	CCNNNNNNNGG	3 cut(s)	48, 49, 452
BseMI	GCAATG	2 cut(s)	98, 716
BseMII	CTCAG	4 cut(s)	393, 528, 644, 782
BseNI	ACTGG	3 cut(s)	34, 53, 964
BseRI	GAGGAG	2 cut(s)	75, 111
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	824, 979
BshFI	GGCC	2 cut(s)	53, 895
BshNI	GGYRCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	48, 49, 452
BsmAI	GTCTC	2 cut(s)	388, 908
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	2 cut(s)	53, 895
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	53, 895
BspCNI	CTCAG	4 cut(s)	392, 527, 643, 781
BspDI	ATCGAT	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	560
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	4, 26, 260
BspT107I	GGYRCC	1 cut(s)	558
BsrDI	GCAATG	2 cut(s)	98, 716
BsrI	ACTGG	3 cut(s)	34, 53, 964
BssECI	CCNNGG	2 cut(s)	13, 248
BssMI	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
Bst2UI	CCWGG	3 cut(s)	14, 250, 1043
Bst4CI	ACNGT	2 cut(s)	566, 699
Bst6I	CTCTTC	3 cut(s)	432, 705, 1047
BstAPI	GCANNNNNTGC	2 cut(s)	494, 699
BstC8I	GCNNGC	4 cut(s)	43, 443, 723, 1155
BstDEI	CTNAG	5 cut(s)	379, 514, 630, 760, 768
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	4 cut(s)	278, 928, 934, 1114
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	6 cut(s)	12, 21, 255, 520, 1138, 1144
BstMAI	GTCTC	2 cut(s)	388, 908
BstMBI	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
BstMWI	GCNNNNNNNGC	6 cut(s)	494, 699, 722, 733, 1001, 1109
BstNI	CCWGG	3 cut(s)	14, 250, 1043
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	12, 248, 1041
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	824, 979
BstX2I	RGATCY	2 cut(s)	252, 517
BstXI	CCANNNNNNTGG	1 cut(s)	249
BstYI	RGATCY	2 cut(s)	252, 517
Bsu15I	ATCGAT	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	768
BsuRI	GGCC	2 cut(s)	53, 895
BsuTUI	ATCGAT	1 cut(s)	263
BtgZI	GCGATG	3 cut(s)	636, 849, 1017
BtsCI	GGATG	4 cut(s)	278, 928, 934, 1114
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	4 cut(s)	43, 443, 723, 1155
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	51, 549
ClaI	ATCGAT	1 cut(s)	263
Csp6I	GTAC	4 cut(s)	327, 541, 559, 780
CviAII	CATG	3 cut(s)	322, 475, 733
CviQI	GTAC	4 cut(s)	327, 541, 559, 780
DdeI	CTNAG	5 cut(s)	379, 514, 630, 760, 768
DpnI	GATC	6 cut(s)	11, 20, 254, 519, 1137, 1143
DpnII	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
DriI	GACNNNNNGTC	1 cut(s)	952
Eam1104I	CTCTTC	3 cut(s)	432, 705, 1047
Eam1105I	GACNNNNNGTC	1 cut(s)	952
EarI	CTCTTC	3 cut(s)	432, 705, 1047
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	2 cut(s)	353, 699
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	12, 248, 1041
FaeI	CATG	3 cut(s)	325, 478, 736
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	321, 474, 732
FauI	CCCGC	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	1141
Fnu4HI	GCNGC	2 cut(s)	813, 993
FokI	GGATG	4 cut(s)	265, 935, 941, 1121
Fsp4HI	GCNGC	2 cut(s)	813, 993
FspBI	CTAG	5 cut(s)	69, 722, 986, 996, 1014
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	2 cut(s)	813, 993
GsuI	CTGGAG	1 cut(s)	981
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	53, 895
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	3 cut(s)	325, 478, 736
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HinfI	GANTC	5 cut(s)	468, 626, 659, 1010, 1130
HphI	GGTGA	5 cut(s)	144, 150, 219, 366, 611
Hpy166II	GTNNAC	2 cut(s)	340, 957
Hpy188I	TCNGA	6 cut(s)	461, 517, 633, 664, 1135, 1146
Hpy188III	TCNNGA	3 cut(s)	865, 974, 1139
Hpy8I	GTNNAC	2 cut(s)	340, 957
HpyAV	CCTTC	4 cut(s)	171, 363, 377, 1176
HpyCH4III	ACNGT	2 cut(s)	566, 699
HpyCH4V	TGCA	4 cut(s)	103, 482, 702, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	494, 699, 722, 733, 1001, 1109
HpyF3I	CTNAG	5 cut(s)	379, 514, 630, 760, 768
Hsp92II	CATG	3 cut(s)	325, 478, 736
HspAI	GCGC	1 cut(s)	725
KpnI	GGTACC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
Lsp1109I	GCAGC	2 cut(s)	824, 979
LweI	GCATC	4 cut(s)	759, 919, 1040, 1099
MaeI	CTAG	5 cut(s)	69, 722, 986, 996, 1014
MaeIII	GTNAC	3 cut(s)	146, 372, 599
MalI	GATC	6 cut(s)	11, 20, 254, 519, 1137, 1143
MboI	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
MboII	GAAGA	7 cut(s)	419, 692, 695, 722, 893, 896, 1064
MflI	RGATCY	2 cut(s)	252, 517
MhlI	GDGCHC	1 cut(s)	399
MlyI	GAGTC	2 cut(s)	477, 1139
MmeI	TCCRAC	2 cut(s)	163, 386
MseI	TTAA	7 cut(s)	177, 294, 705, 843, 1019, 1095, 1185
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	14, 250, 1043
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	3 cut(s)	14, 250, 1043
MwoI	GCNNNNNNNGC	6 cut(s)	494, 699, 722, 733, 1001, 1109
NdeII	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	3 cut(s)	325, 478, 736
NlaIV	GGNNCC	1 cut(s)	560
NmuCI	GTSAC	2 cut(s)	372, 599
OliI	CACNNNNGTG	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	544
PctI	GAATGC	1 cut(s)	1105
PfeI	GAWTC	3 cut(s)	626, 659, 1010
PkrI	GCNGC	2 cut(s)	814, 994
PleI	GAGTC	2 cut(s)	476, 1138
PpsI	GAGTC	2 cut(s)	476, 1138
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	12, 248, 1041
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	12, 248, 1041
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	2 cut(s)	51, 549
PspXI	VCTCGAGB	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	252, 517
RsaI	GTAC	4 cut(s)	328, 542, 560, 781
RsaNI	GTAC	4 cut(s)	327, 541, 559, 780
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	7 cut(s)	177, 294, 705, 843, 1019, 1095, 1185
SatI	GCNGC	2 cut(s)	813, 993
Sau3AI	GATC	6 cut(s)	9, 18, 252, 517, 1135, 1141
Sau96I	GGNCC	2 cut(s)	51, 549
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	2 cut(s)	477, 1139
ScrFI	CCNGG	3 cut(s)	14, 250, 1043
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	4 cut(s)	759, 919, 1040, 1099
Sfr274I	CTCGAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	544, 610
SmoI	CTYRAG	2 cut(s)	544, 610
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	5 cut(s)	69, 722, 986, 996, 1014
StyD4I	CCNGG	3 cut(s)	12, 248, 1041
TaaI	ACNGT	2 cut(s)	566, 699
TaqI	TCGA	2 cut(s)	263, 545
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	626, 659, 1010
Tru1I	TTAA	7 cut(s)	177, 294, 705, 843, 1019, 1095, 1185
Tru9I	TTAA	7 cut(s)	177, 294, 705, 843, 1019, 1095, 1185
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	372, 599
TseI	GCWGC	2 cut(s)	812, 992
Tsp45I	GTSAC	2 cut(s)	372, 599
TspDTI	ATGAA	3 cut(s)	288, 295, 1065
TspGWI	ACGGA	3 cut(s)	50, 271, 935
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	549
VspI	ATTAAT	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1079
XhoI	CTCGAG	1 cut(s)	544
XspI	CTAG	5 cut(s)	69, 722, 986, 996, 1014
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.