Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013203.1

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

8156 .. 9055

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013203.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgtcatttctgggcttgaatcctggggatcctaacaactggtatcagagcccgcaactgggcctgtttctggtgagtccggcggtgcacagttatgggatctccagcgcttgttatctcacacattcgtctcaccctcacggtagccctagctacccactacctcctccccaatttccattacaaccgagctacccacctcctccttcatttccattccaaccgagttactcaccaccaccaccaccacctccccaaacaatcattaatgggtatgtttccctcatcaatttccatcaacccatacttaccattcaccttattctaacccaaatccttggatctatccatcgatttcctattaaccatcagttagcagtgttaattcacacttcttctccaccaaaaccatgcgtactgcacctgtttaccattctactccttcaattccaaccttcagtctccacctttgtgccccaactccaatttactgatccaaaacctcttcctctccatagcaagcagtttcggggtttcagatgtagagtcgtcgttatgggtgcaaaagcaagagttgccaaaaagacccgaaacccagatctgctccgtgatgtaggtaagtactcgaggtccaagaggtaccacaggtacggtctctgggtcatcaaggccagaaacggcgatgtattcccatactacaactccaaggcggcagttgtaattatggaggagcttcatcaactacttgtgggtcaaaaaactctaattactgagccggccttgaggccattgaattttgggtcactaccagctcctatggttgctgcgtctcttacggcatcggggaagacatcgtcctcagctacggctatagctggaggtagtattcgaatctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

299

Amino Acids

32.93

Weight (kDa)

10.08

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	639
AciI	CCGC	3 cut(s)	53, 83, 710
AclWI	GGATC	5 cut(s)	23, 36, 107, 349, 488
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	4 cut(s)	417, 623, 641, 650
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	3 cut(s)	58, 59, 70
AgsI	TTSAA	3 cut(s)	19, 446, 793
AjnI	CCWGG	1 cut(s)	22
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	6 cut(s)	153, 192, 733, 812, 863, 875
AluI	AGCT	6 cut(s)	153, 192, 733, 812, 863, 875
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	4 cut(s)	135, 466, 659, 834
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	5 cut(s)	23, 36, 107, 349, 488
Ama87I	CYCGRG	1 cut(s)	625
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	4 cut(s)	61, 669, 777, 785
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	1 cut(s)	793
AseI	ATTAAT	1 cut(s)	267
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	61, 630
AsuHPI	GGTGA	4 cut(s)	85, 125, 225, 308
AsuII	TTCGAA	1 cut(s)	889
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	630
BaeGI	GKGCMC	2 cut(s)	90, 477
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	859
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	3 cut(s)	303, 357, 375
BceAI	ACGGC	3 cut(s)	694, 852, 882
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	4 cut(s)	135, 466, 659, 834
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	870
BfoI	RGCGCY	1 cut(s)	111
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	2 cut(s)	711, 825
BlsI	GCNGC	2 cut(s)	712, 826
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	61, 630
BmiI	GGNNCC	2 cut(s)	30, 641
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	854
BpmI	CTGGAG	2 cut(s)	88, 897
Bpu10I	CCTNAGC	1 cut(s)	859
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	802
Bsa29I	ATCGAT	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	3 cut(s)	23, 337, 705
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 686, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 59, 70
Bse118I	RCCGGY	1 cut(s)	775
Bse1I	ACTGG	2 cut(s)	44, 63
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	3 cut(s)	23, 337, 705
BseLI	CCNNNNNNNGG	3 cut(s)	58, 59, 70
BseMII	CTCAG	2 cut(s)	762, 873
BseNI	ACTGG	2 cut(s)	44, 63
BseRI	GAGGAG	3 cut(s)	156, 192, 743
BseSI	GKGCMC	2 cut(s)	90, 477
BseXI	GCAGC	1 cut(s)	811
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	63, 671, 779, 787
BshNI	GGYRCC	1 cut(s)	639
BshVI	ATCGAT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	80, 776
BslI	CCNNNNNNNGG	3 cut(s)	58, 59, 70
BsmAI	GTCTC	4 cut(s)	135, 466, 659, 834
BsmBI	CGTCTC	2 cut(s)	135, 834
BsnI	GGCC	4 cut(s)	63, 671, 779, 787
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	625
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	3 cut(s)	53, 90, 477
Bsp143I	GATC	5 cut(s)	28, 99, 341, 493, 598
BspACI	CCGC	3 cut(s)	53, 83, 710
BspANI	GGCC	4 cut(s)	63, 671, 779, 787
BspCNI	CTCAG	2 cut(s)	763, 872
BspDI	ATCGAT	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	30, 641
BspPI	GGATC	5 cut(s)	23, 36, 107, 349, 488
BspT104I	TTCGAA	1 cut(s)	889
BspT107I	GGYRCC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	775
BsrI	ACTGG	2 cut(s)	44, 63
BssAI	RCCGGY	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	23, 337, 705
BssMI	GATC	5 cut(s)	28, 99, 341, 493, 598
BssT1I	CCWWGG	2 cut(s)	337, 705
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	92, 143, 653
Bst6I	CTCTTC	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	53, 521, 777
BstDEI	CTNAG	2 cut(s)	771, 859
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	31, 102, 344, 496, 601
BstMAI	GTCTC	4 cut(s)	135, 466, 659, 834
BstMBI	GATC	5 cut(s)	28, 99, 341, 493, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	2 cut(s)	90, 477
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	4 cut(s)	28, 99, 341, 598
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	4 cut(s)	28, 99, 341, 598
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	63, 671, 779, 787
BsuTUI	ATCGAT	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	696
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	53, 521, 777
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	775
Cfr13I	GGNCC	2 cut(s)	61, 630
ClaI	ATCGAT	1 cut(s)	352
CseI	GACGC	1 cut(s)	816
Csp6I	GTAC	4 cut(s)	416, 622, 640, 649
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	4 cut(s)	416, 622, 640, 649
DdeI	CTNAG	2 cut(s)	771, 859
DpnI	GATC	5 cut(s)	30, 101, 343, 495, 600
DpnII	GATC	5 cut(s)	28, 99, 341, 493, 598
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	337, 705
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	630
Eco47III	AGCGCT	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	337, 705
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	337, 705
Esp3I	CGTCTC	2 cut(s)	135, 834
FaeI	CATG	1 cut(s)	414
FatI	CATG	1 cut(s)	410
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	711, 825
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	711, 825
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	711, 825
GsuI	CTGGAG	2 cut(s)	88, 897
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	63, 671, 779, 787
HapII	CCGG	2 cut(s)	80, 776
HgaI	GACGC	1 cut(s)	816
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	19, 76, 546, 891
HpaII	CCGG	2 cut(s)	80, 776
HphI	GGTGA	4 cut(s)	85, 125, 225, 308
Hpy166II	GTNNAC	2 cut(s)	88, 429
Hpy188I	TCNGA	2 cut(s)	48, 539
Hpy8I	GTNNAC	2 cut(s)	88, 429
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	3 cut(s)	216, 452, 465
HpyCH4III	ACNGT	3 cut(s)	92, 143, 653
HpyCH4V	TGCA	3 cut(s)	88, 421, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	2 cut(s)	771, 859
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	643
KroI	GCCGGC	1 cut(s)	775
KroNI	GCCGGC	1 cut(s)	777
Kzo9I	GATC	5 cut(s)	28, 99, 341, 493, 598
LmnI	GCTCC	3 cut(s)	609, 730, 817
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	1 cut(s)	848
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	227, 801
MalI	GATC	5 cut(s)	30, 101, 343, 495, 600
MboI	GATC	5 cut(s)	28, 99, 341, 493, 598
MboII	GAAGA	3 cut(s)	387, 497, 859
MflI	RGATCY	4 cut(s)	28, 99, 341, 598
MhlI	GDGCHC	3 cut(s)	53, 90, 477
MluCI	AATT	8 cut(s)	173, 289, 384, 446, 485, 720, 765, 793
MlyI	GAGTC	2 cut(s)	85, 555
MmeI	TCCRAC	2 cut(s)	244, 475
MroNI	GCCGGC	1 cut(s)	775
MseI	TTAA	3 cut(s)	267, 363, 383
MslI	CAYNNNNRTG	2 cut(s)	93, 470
MspI	CCGG	2 cut(s)	80, 776
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	575
NaeI	GCCGGC	1 cut(s)	777
NdeII	GATC	5 cut(s)	28, 99, 341, 493, 598
NgoMIV	GCCGGC	1 cut(s)	775
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	2 cut(s)	30, 641
NmuCI	GTSAC	1 cut(s)	801
NspV	TTCGAA	1 cut(s)	889
OliI	CACNNNNGTG	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	19, 891
PflFI	GACNNNGTC	1 cut(s)	853
PkrI	GCNGC	2 cut(s)	712, 826
PleI	GAGTC	2 cut(s)	84, 554
PpsI	GAGTC	2 cut(s)	84, 554
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	30, 641
PspPI	GGNCC	2 cut(s)	61, 630
PspXI	VCTCGAGB	1 cut(s)	625
PsuI	RGATCY	4 cut(s)	28, 99, 341, 598
PsyI	GACNNNGTC	1 cut(s)	853
RsaI	GTAC	4 cut(s)	417, 623, 641, 650
RsaNI	GTAC	4 cut(s)	416, 622, 640, 649
RseI	CAYNNNNRTG	2 cut(s)	93, 470
SaqAI	TTAA	3 cut(s)	267, 363, 383
SatI	GCNGC	2 cut(s)	711, 825
Sau3AI	GATC	5 cut(s)	28, 99, 341, 493, 598
Sau96I	GGNCC	2 cut(s)	61, 630
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	85, 555
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	3 cut(s)	53, 90, 477
SfaNI	GCATC	1 cut(s)	848
SfcI	CTRYAG	1 cut(s)	870
Sfr274I	CTCGAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	1 cut(s)	630
SlaI	CTCGAG	1 cut(s)	625
SmiMI	CAYNNNNRTG	2 cut(s)	93, 470
SmlI	CTYRAG	2 cut(s)	625, 781
SmoI	CTYRAG	2 cut(s)	625, 781
Sse9I	AATT	8 cut(s)	173, 289, 384, 446, 485, 720, 765, 793
SsiI	CCGC	3 cut(s)	53, 83, 710
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	337, 705
TaaI	ACNGT	3 cut(s)	92, 143, 653
TaqI	TCGA	3 cut(s)	352, 626, 889
TasI	AATT	8 cut(s)	173, 289, 384, 446, 485, 720, 765, 793
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	19, 891
Tru1I	TTAA	3 cut(s)	267, 363, 383
Tru9I	TTAA	3 cut(s)	267, 363, 383
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	2 cut(s)	198, 725
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	853
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	630
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	793
XhoI	CTCGAG	1 cut(s)	625
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.