Rmu_sc0040893.1_g000001

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040893.1
OG0006940
Physical Location & Seq
Reverse (-)
1 .. 673
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040893.1_g000001.1.cds

Sequence Viewer

Length: 648 bp
atgtcaattctggacttggatcctgaggatcctaacaactggtatcagagcccgcacctgggcctgtttctggttagtccggggtacggcggtgggatctccgcggcttgttattgcacgcattcgtctcaccctcacggcagccctagctacccaccaccaccttcccaaacaatcatcaatgggtatgttttccctcatcaatttccatcaacccacacttaccattcacctcattctgacccaaatccctggatatacccttcgatttcacaacaccattcctatggcccgtcagtttccagtgttcattctccgttcatcttcaccaaaaccatgaccacaccacctatttaccattatgctccttcaatccaaacctttcagtcacccttggtccctacttttatgccccaactcccaattacatatcccaaacctctttctctgaatcgcaagtcgtttcagcgtttcagacatagagtcgccatggcggcgaaagagagaattgccaaaaagacccgaaacccatatatgttccatggtgtgggtaagtactcgaggtccaagatgtaccacaagcgcggtctttggccatcaaggccaaaaatggaggtgccttcccacgtcacaactccaaggaggcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

216

Amino Acids

24.6

Weight (kDa)

9.94

Isoelectric Point (pI)

79.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 2 cut(s) 104, 585
AciI CCGC 6 cut(s) 53, 90, 102, 104, 494, 585
AclWI GGATC 5 cut(s) 14, 23, 27, 36, 104
AcoI YGGCCR 1 cut(s) 593
AfaI GTAC 3 cut(s) 86, 557, 575
AfiI CCNNNNNNNGG 5 cut(s) 58, 59, 70, 86, 547
AgsI TTSAA 1 cut(s) 372
AhdI GACNNNNNGTC 1 cut(s) 482
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 2 cut(s) 57, 251
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 5 cut(s) 14, 23, 27, 36, 104
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 4 cut(s) 61, 289, 593, 602
ApeKI GCWGC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 4 cut(s) 61, 290, 397, 564
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 4 cut(s) 122, 222, 319, 381
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 2 cut(s) 397, 564
AxyI CCTNAGG 1 cut(s) 24
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BalI TGGCCA 1 cut(s) 595
BamHI GGATCC 2 cut(s) 19, 28
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 153
BccI CCATC 2 cut(s) 217, 604
BceAI ACGGC 2 cut(s) 103, 154
BciT130I CCWGG 2 cut(s) 59, 253
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 147
BglI GCCNNNNNGGC 2 cut(s) 494, 601
BisI GCNGC 3 cut(s) 105, 142, 495
BlsI GCNGC 3 cut(s) 106, 143, 496
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 3 cut(s) 59, 81, 253
Bme18I GGWCC 2 cut(s) 397, 564
BmeRI GACNNNNNGTC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 559
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 4 cut(s) 61, 290, 397, 564
BmiI GGNNCC 4 cut(s) 21, 30, 399, 618
BmrFI CCNGG 3 cut(s) 59, 81, 253
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 8 cut(s) 58, 80, 102, 251, 393, 489, 541, 638
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 59, 70, 86, 547
Bse1I ACTGG 2 cut(s) 44, 303
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 59, 253
BseDI CCNNGG 8 cut(s) 58, 80, 102, 251, 393, 489, 541, 638
BseLI CCNNNNNNNGG 5 cut(s) 58, 59, 70, 86, 547
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 44, 303
BseXI GCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 104, 585
BshFI GGCC 4 cut(s) 63, 291, 595, 604
BshNI GGYRCC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 5 cut(s) 58, 59, 70, 86, 547
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 4 cut(s) 63, 291, 595, 604
BsoBI CYCGRG 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 19, 28, 96
Bsp19I CCATGG 2 cut(s) 489, 541
BspACI CCGC 6 cut(s) 53, 90, 102, 104, 494, 585
BspANI GGCC 4 cut(s) 63, 291, 595, 604
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 2 cut(s) 104, 585
BspLI GGNNCC 4 cut(s) 21, 30, 399, 618
BspPI GGATC 5 cut(s) 14, 23, 27, 36, 104
BspT107I GGYRCC 1 cut(s) 616
BsrI ACTGG 2 cut(s) 44, 303
BssECI CCNNGG 8 cut(s) 58, 80, 102, 251, 393, 489, 541, 638
BssMI GATC 3 cut(s) 19, 28, 96
BssT1I CCWWGG 4 cut(s) 393, 489, 541, 638
Bst2UI CCWGG 2 cut(s) 59, 253
BstC8I GCNNGC 2 cut(s) 53, 119
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 3 cut(s) 102, 489, 541
BstFNI CGCG 2 cut(s) 104, 585
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 3 cut(s) 22, 31, 99
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 19, 28, 96
BstMWI GCNNNNNNNGC 3 cut(s) 147, 494, 601
BstNI CCWGG 2 cut(s) 59, 253
BstSCI CCNGG 3 cut(s) 57, 79, 251
BstUI CGCG 2 cut(s) 104, 585
BstV1I GCAGC 1 cut(s) 153
BstX2I RGATCY 3 cut(s) 19, 28, 96
BstXI CCANNNNNNTGG 2 cut(s) 252, 287
BstYI RGATCY 3 cut(s) 19, 28, 96
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 4 cut(s) 63, 291, 595, 604
BtgI CCRYGG 3 cut(s) 102, 489, 541
BtrI CACGTC 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 53, 119
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 4 cut(s) 61, 290, 397, 564
Cfr42I CCGCGG 1 cut(s) 105
Csp6I GTAC 3 cut(s) 85, 556, 574
CviAII CATG 3 cut(s) 337, 490, 542
CviJI RGCY 8 cut(s) 51, 63, 107, 144, 150, 291, 595, 604
CviKI_1 RGCY 8 cut(s) 51, 63, 107, 144, 150, 291, 595, 604
CviQI GTAC 3 cut(s) 85, 556, 574
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 21, 30, 98
DpnII GATC 3 cut(s) 19, 28, 96
DriI GACNNNNNGTC 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 593
Eam1105I GACNNNNNGTC 1 cut(s) 482
Eco130I CCWWGG 4 cut(s) 393, 489, 541, 638
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 397, 564
Eco81I CCTNAGG 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 57, 251
EcoT14I CCWWGG 4 cut(s) 393, 489, 541, 638
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 4 cut(s) 393, 489, 541, 638
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 3 cut(s) 340, 493, 545
FaqI GGGAC 1 cut(s) 383
FatI CATG 3 cut(s) 336, 489, 541
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 105, 142, 495
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 105, 142, 495
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 584
GluI GCNGC 3 cut(s) 105, 142, 495
HaeIII GGCC 4 cut(s) 63, 291, 595, 604
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 585
Hin1II CATG 3 cut(s) 340, 493, 545
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HinfI GANTC 2 cut(s) 451, 483
HpaII CCGG 1 cut(s) 80
HphI GGTGA 4 cut(s) 122, 222, 319, 381
Hpy188I TCNGA 4 cut(s) 48, 241, 450, 476
Hpy188III TCNNGA 2 cut(s) 11, 23
HpyAV CCTTC 4 cut(s) 174, 273, 378, 630
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 494, 601
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 3 cut(s) 340, 493, 545
HspAI GCGC 1 cut(s) 583
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 3 cut(s) 19, 28, 96
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 2 cut(s) 387, 628
MalI GATC 3 cut(s) 21, 30, 98
MboI GATC 3 cut(s) 19, 28, 96
MboII GAAGA 1 cut(s) 316
MflI RGATCY 3 cut(s) 19, 28, 96
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 4 cut(s) 6, 203, 423, 507
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 1 cut(s) 492
MnlI CCTC 8 cut(s) 19, 144, 207, 243, 450, 555, 607, 636
Mox20I TGGCCA 1 cut(s) 595
MscI TGGCCA 1 cut(s) 595
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 59, 81, 253
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 2 cut(s) 59, 253
MvnI CGCG 2 cut(s) 104, 585
MwoI GCNNNNNNNGC 3 cut(s) 147, 494, 601
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 2 cut(s) 489, 541
NdeII GATC 3 cut(s) 19, 28, 96
NlaIII CATG 3 cut(s) 340, 493, 545
NlaIV GGNNCC 4 cut(s) 21, 30, 399, 618
NmuCI GTSAC 2 cut(s) 387, 628
PaeR7I CTCGAG 1 cut(s) 559
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 106, 143, 496
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 57, 251
PspGI CCWGG 2 cut(s) 57, 251
PspN4I GGNNCC 4 cut(s) 21, 30, 399, 618
PspPI GGNCC 4 cut(s) 61, 290, 397, 564
PspXI VCTCGAGB 1 cut(s) 559
PsuI RGATCY 3 cut(s) 19, 28, 96
RsaI GTAC 3 cut(s) 86, 557, 575
RsaNI GTAC 3 cut(s) 85, 556, 574
RseI CAYNNNNRTG 1 cut(s) 285
SacII CCGCGG 1 cut(s) 105
SatI GCNGC 3 cut(s) 105, 142, 495
Sau3AI GATC 3 cut(s) 19, 28, 96
Sau96I GGNCC 4 cut(s) 61, 290, 397, 564
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 492
ScrFI CCNGG 3 cut(s) 59, 81, 253
SduI GDGCHC 1 cut(s) 53
SfiI GGCCNNNNNGGCC 1 cut(s) 601
Sfr274I CTCGAG 1 cut(s) 559
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 2 cut(s) 397, 564
SlaI CTCGAG 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 4 cut(s) 6, 203, 423, 507
SsiI CCGC 6 cut(s) 53, 90, 102, 104, 494, 585
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 57, 79, 251
StyI CCWWGG 4 cut(s) 393, 489, 541, 638
TaiI ACGT 1 cut(s) 630
TaqI TCGA 2 cut(s) 266, 560
TasI AATT 4 cut(s) 6, 203, 423, 507
TatI WGTACW 1 cut(s) 555
TauI GCSGC 2 cut(s) 107, 497
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 387, 628
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 2 cut(s) 387, 628
TspDTI ATGAA 2 cut(s) 299, 310
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 397, 564
XhoI CTCGAG 1 cut(s) 559
XspI CTAG 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.