ribosomal large subunit assembly
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g17061 |
| malus_domestica | MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1 |
| pyrus_communis | pycom02g05550 pycom02g25640 |
| rosa_chinensis | RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661 |
| rosa_multiflora | Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 19 |
| AcuI | CTGAAG | 1 cut(s) | 60 |
| AgsI | TTSAA | 2 cut(s) | 121, 145 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| AluBI | AGCT | 1 cut(s) | 92 |
| AluI | AGCT | 1 cut(s) | 92 |
| ApeKI | GCWGC | 1 cut(s) | 51 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 45 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BisI | GCNGC | 1 cut(s) | 52 |
| BlsI | GCNGC | 1 cut(s) | 53 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 1 cut(s) | 157 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| BspACI | CCGC | 1 cut(s) | 19 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssMI | GATC | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 2 cut(s) | 76, 164 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 75 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 2 cut(s) | 76, 164 |
| CviJI | RGCY | 2 cut(s) | 92, 110 |
| CviKI_1 | RGCY | 2 cut(s) | 92, 110 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| Eco57I | CTGAAG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| FaiI | YATR | 2 cut(s) | 107, 203 |
| Fnu4HI | GCNGC | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 1 cut(s) | 52 |
| GluI | GCNGC | 1 cut(s) | 52 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| HinfI | GANTC | 2 cut(s) | 46, 117 |
| Hpy166II | GTNNAC | 1 cut(s) | 28 |
| Hpy8I | GTNNAC | 1 cut(s) | 28 |
| HpyAV | CCTTC | 1 cut(s) | 35 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 2 cut(s) | 35, 69 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| LpnPI | CCDG | 5 cut(s) | 51, 55, 72, 96, 99 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| LweI | GCATC | 1 cut(s) | 157 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 1 cut(s) | 101 |
| MboI | GATC | 1 cut(s) | 99 |
| MboII | GAAGA | 2 cut(s) | 126, 147 |
| MroXI | GAANNNNTTC | 1 cut(s) | 45 |
| MseI | TTAA | 2 cut(s) | 180, 197 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 75 |
| NdeII | GATC | 1 cut(s) | 99 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 45 |
| PfeI | GAWTC | 2 cut(s) | 46, 117 |
| PkrI | GCNGC | 1 cut(s) | 53 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| SaqAI | TTAA | 2 cut(s) | 180, 197 |
| SatI | GCNGC | 1 cut(s) | 52 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SetI | ASST | 2 cut(s) | 40, 94 |
| SfaNI | GCATC | 1 cut(s) | 157 |
| SgeI | CNNG | 9 cut(s) | 50, 82, 87, 98, 99, 123, 133, 171, 175 |
| SsiI | CCGC | 1 cut(s) | 19 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TfiI | GAWTC | 2 cut(s) | 46, 117 |
| Tru1I | TTAA | 2 cut(s) | 180, 197 |
| Tru9I | TTAA | 2 cut(s) | 180, 197 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 51 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspRI | CASTG | 1 cut(s) | 181 |
| XmnI | GAANNNNTTC | 1 cut(s) | 45 |