Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

22716333 .. 22716596

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1183300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGCCGAAGCAAAGGACTCCAAAGGTGACTAGAAACCCATATCTGATCAGAAGGATTGGGAAATACTCGAGGTTCAAGATGTACCACAAACGAGGGATTTGGGCTATAAAGGCCAAGAACGGCGGTGCTTTCCCCTACCACGAAAAGAAGCATGCCGCCGACGCTCCGGCTGTCAAGCCGCCCAAGTTTTACCCCGCCGATGATGTCAAGAAGCCTCTCGTCAACAAGCACAAGCCCCAAGTCCACAAAACTCAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

88

Amino Acids

10.06

Weight (kDa)

10.6

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	4.8e-13	Ribosomal protein L6, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	4 cut(s)	126, 159, 182, 198
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	2 cut(s)	33, 262
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	159, 182
BlsI	GCNGC	2 cut(s)	160, 183
BmeT110I	CYCGRG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	4 cut(s)	126, 159, 182, 198
BspANI	GGCC	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 164
BstNSI	RCATGY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	7 cut(s)	107, 116, 173, 181, 217, 238, 261
CviKI_1	RGCY	7 cut(s)	107, 116, 173, 181, 217, 238, 261
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	43, 110, 156
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	159, 182
Fsp4HI	GCNGC	2 cut(s)	159, 182
FspBI	CTAG	2 cut(s)	33, 262
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	159, 182
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	226, 247
Hpy188I	TCNGA	2 cut(s)	48, 53
Hpy188III	TCNNGA	2 cut(s)	79, 211
Hpy8I	GTNNAC	2 cut(s)	226, 247
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 164
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	2 cut(s)	183, 242
MaeI	CTAG	2 cut(s)	33, 262
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	66, 89, 228
MspI	CCGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	113, 164
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	160, 183
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	70
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SatI	GCNGC	2 cut(s)	159, 182
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	13
SetI	ASST	2 cut(s)	30, 77
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	158
SsiI	CCGC	4 cut(s)	126, 159, 182, 198
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	33, 262
TaqI	TCGA	1 cut(s)	71
TauI	GCSGC	2 cut(s)	161, 184
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	2 cut(s)	33, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.