Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

26633374 .. 26637988

Gene Structure 4615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1226400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATAGAATTTGCAGAAGACTATATCAGCCAAAAGCTCATCACAGAAGGAATTAACTCAGCTTCTGAAATACCTTCCTTTCTTGTATCCAGTTTTTACACCAGCAGCAGCAGGATGTCAAATATTTCATCAAATTCTCTCCCAGCTGTTGATGACAGCAAATCCTCCCTGGCTTTTCTCGCTCCTCTTGAAGCAATTCTGTTTGATATCGATGGAACATTGTGTGATTCAGATCCCCTCCATTACCATGCTTTCCGTGAAATGCTTCAAGAAGTAGGCTATAATGGAGGGGTTCCTATCACTGAGGAATTCTACAGTGAACATATTAGTGGAAAGAACAATGAGTATCTTTGCGGTACCATCTTTCCCGATTGGGAAATCAAAAGGGCAAGAAAATTCTTGGAAGATAAGGAAGCCTTTTTCCGAAGATTGGCATCTGAAGAATTGGAACCTGTCAAGGGCCTTGACAAGTTGTGCAAATGGATTGAAAAGCAAGGCTTGAGACGGGCCGCAGTGACAAATTCTCCACGAGCAAGTGGGGAGCTAATGATATCATCATTAGGGCTCACAGACTTCTTTGAAATTCTCGTTATTGGAAATGAATGTGATCGAGCAAAACCATTTCCAGACCCTTATTTGAAGGCTCTTGAAACACTTGAAGTGTCACATGAGCATACTTTTATCTTTGAGGATTCCGTTTCAGGAACGACAGCTGGAGTAGCAGCTGGAATGCCAGTTGTTGGTATAGCTACAAGGAATCCTGGGACGTCATTGATTAACGCTGGAGTCTCCTTCGTTATTAAAGATTTTGAGGACACGAAATTGTGGGAAGCACTGGAAAAGTTGGAGAAGAAGCCCGAGGCAACGGCAGAGGCAACACCAGAGGCAATAACAGTTGCAATTGCAACTCCAACTCCCAGTAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

310

Amino Acids

34.02

Weight (kDa)

4.67

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	64 - 243	3e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	66 - 249	1.1e-28	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	770
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	2 cut(s)	354, 510
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	6 cut(s)	8, 133, 308, 395, 520, 582
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	3 cut(s)	430, 458, 740
AgsI	TTSAA	7 cut(s)	191, 269, 488, 581, 640, 650, 659
AjnI	CCWGG	2 cut(s)	168, 760
AluBI	AGCT	7 cut(s)	37, 62, 146, 544, 713, 725, 749
AluI	AGCT	7 cut(s)	37, 62, 146, 544, 713, 725, 749
Alw26I	GTCTC	2 cut(s)	496, 793
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	2 cut(s)	460, 507
ApeKI	GCWGC	3 cut(s)	105, 108, 722
ApoI	RAATTY	6 cut(s)	8, 133, 308, 395, 520, 582
Asp700I	GAANNNNTTC	2 cut(s)	195, 264
Asp718I	GGTACC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	460, 507
AvaI	CYCGRG	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	117, 120, 734
BccI	CCATC	2 cut(s)	206, 368
BceAI	ACGGC	1 cut(s)	882
BciT130I	CCWGG	2 cut(s)	170, 762
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	496, 793
BfmI	CTRYAG	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	4 cut(s)	106, 109, 510, 723
BlsI	GCNGC	4 cut(s)	107, 110, 511, 724
Bme1390I	CCNGG	2 cut(s)	170, 762
BmeT110I	CYCGRG	1 cut(s)	857
BmgT120I	GGNCC	2 cut(s)	460, 507
BmiI	GGNNCC	3 cut(s)	294, 358, 450
BmrFI	CCNGG	2 cut(s)	170, 762
BmrI	ACTGGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	912
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	735, 804
BpuEI	CTTGAG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	231, 433
BsaHI	GRCGYC	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	168, 761, 858
BsaXI	ACNNNNNCTCC	4 cut(s)	508, 538, 898, 928
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 458, 740
Bse1I	ACTGG	4 cut(s)	90, 734, 840, 918
Bse8I	GATNNNNATC	2 cut(s)	231, 433
BseBI	CCWGG	2 cut(s)	170, 762
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	168, 761, 858
BseGI	GGATG	1 cut(s)	120
BseJI	GATNNNNATC	2 cut(s)	231, 433
BseLI	CCNNNNNNNGG	3 cut(s)	430, 458, 740
BseMII	CTCAG	2 cut(s)	72, 294
BseNI	ACTGG	4 cut(s)	90, 734, 840, 918
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	117, 120, 734
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	2 cut(s)	462, 509
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	857
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	3 cut(s)	430, 458, 740
BsmAI	GTCTC	2 cut(s)	496, 793
BsmBI	CGTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	778
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	462, 509
BsoBI	CYCGRG	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	232, 607
BspACI	CCGC	2 cut(s)	354, 510
BspANI	GGCC	2 cut(s)	462, 509
BspCNI	CTCAG	2 cut(s)	71, 295
BspDI	ATCGAT	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	294, 358, 450
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	4 cut(s)	90, 734, 840, 918
BssECI	CCNNGG	3 cut(s)	168, 761, 858
BssMI	GATC	2 cut(s)	232, 607
BssNI	GRCGYC	1 cut(s)	767
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	170, 762
Bst4CI	ACNGT	2 cut(s)	317, 895
BstACI	GRCGYC	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	58, 303
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	235, 610
BstMAI	GTCTC	2 cut(s)	496, 793
BstMBI	GATC	2 cut(s)	232, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 719
BstNI	CCWGG	2 cut(s)	170, 762
BstSCI	CCNGG	2 cut(s)	168, 760
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	3 cut(s)	117, 120, 734
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	462, 509
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	300, 322, 519, 833
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	460, 507
ClaI	ATCGAT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	248, 668
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	2 cut(s)	58, 303
DpnI	GATC	2 cut(s)	234, 609
DpnII	GATC	2 cut(s)	232, 607
Eco24I	GRGCYC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	208, 552
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	168, 760
EcoRV	GATATC	2 cut(s)	208, 552
EcoT38I	GRGCYC	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	2 cut(s)	251, 671
FaiI	YATR	9 cut(s)	24, 249, 282, 324, 669, 675, 746, 926, 928
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 482, 514
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	2 cut(s)	247, 667
Fnu4HI	GCNGC	4 cut(s)	106, 109, 510, 723
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	4 cut(s)	106, 109, 510, 723
GluI	GCNGC	4 cut(s)	106, 109, 510, 723
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	735, 804
HaeIII	GGCC	2 cut(s)	462, 509
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	2 cut(s)	251, 671
HinfI	GANTC	4 cut(s)	227, 692, 757, 786
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	67, 232, 425, 439
Hpy188III	TCNNGA	6 cut(s)	188, 269, 368, 626, 647, 702
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	41, 84, 634, 802
HpyCH4III	ACNGT	2 cut(s)	317, 895
HpyCH4IV	ACGT	1 cut(s)	767
HpyCH4V	TGCA	4 cut(s)	14, 477, 899, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 719
HpyF3I	CTNAG	2 cut(s)	58, 303
HpySE526I	ACGT	1 cut(s)	767
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	2 cut(s)	251, 671
KpnI	GGTACC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	232, 607
LmnI	GCTCC	2 cut(s)	187, 541
Lsp1109I	GCAGC	3 cut(s)	117, 120, 734
LweI	GCATC	1 cut(s)	443
MaeII	ACGT	1 cut(s)	767
MaeIII	GTNAC	2 cut(s)	514, 663
MalI	GATC	2 cut(s)	234, 609
MboI	GATC	2 cut(s)	232, 607
MboII	GAAGA	5 cut(s)	29, 416, 438, 452, 862
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	795
MmeI	TCCRAC	1 cut(s)	825
MroXI	GAANNNNTTC	2 cut(s)	195, 264
MseI	TTAA	3 cut(s)	54, 777, 801
MslI	CAYNNNNRTG	2 cut(s)	246, 327
MspA1I	CMGCKG	3 cut(s)	146, 713, 725
MspR9I	CCNGG	2 cut(s)	170, 762
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	170, 762
MwoI	GCNNNNNNNGC	2 cut(s)	179, 719
NdeII	GATC	2 cut(s)	232, 607
NlaIII	CATG	2 cut(s)	251, 671
NlaIV	GGNNCC	3 cut(s)	294, 358, 450
NmuCI	GTSAC	2 cut(s)	514, 663
PctI	GAATGC	1 cut(s)	735
PdmI	GAANNNNTTC	2 cut(s)	195, 264
PfeI	GAWTC	3 cut(s)	227, 692, 757
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	4 cut(s)	107, 110, 511, 724
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
Psp6I	CCWGG	2 cut(s)	168, 760
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	2 cut(s)	168, 760
PspN4I	GGNNCC	3 cut(s)	294, 358, 450
PspPI	GGNCC	2 cut(s)	460, 507
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	3 cut(s)	146, 713, 725
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	246, 327
SaqAI	TTAA	3 cut(s)	54, 777, 801
SatI	GCNGC	4 cut(s)	106, 109, 510, 723
Sau3AI	GATC	2 cut(s)	232, 607
Sau96I	GGNCC	2 cut(s)	460, 507
SchI	GAGTC	1 cut(s)	795
ScrFI	CCNGG	2 cut(s)	170, 762
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	246, 327
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
SsiI	CCGC	2 cut(s)	354, 510
SspI	AATATT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	168, 760
TaaI	ACNGT	2 cut(s)	317, 895
TaiI	ACGT	1 cut(s)	770
TaqI	TCGA	2 cut(s)	210, 610
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	3 cut(s)	227, 692, 757
Tru1I	TTAA	3 cut(s)	54, 777, 801
Tru9I	TTAA	3 cut(s)	54, 777, 801
TscAI	CASTG	4 cut(s)	307, 322, 519, 840
TseFI	GTSAC	2 cut(s)	514, 663
TseI	GCWGC	3 cut(s)	105, 108, 722
Tsp45I	GTSAC	2 cut(s)	514, 663
TspDTI	ATGAA	2 cut(s)	117, 615
TspGWI	ACGGA	2 cut(s)	245, 685
TspRI	CASTG	4 cut(s)	307, 322, 519, 840
Van91I	CCANNNNNTGG	1 cut(s)	740
XapI	RAATTY	6 cut(s)	8, 133, 308, 395, 520, 582
XmnI	GAANNNNTTC	2 cut(s)	195, 264
ZraI	GACGTC	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.