Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

35938668 .. 35939569

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGTTCTTATTTGTACTGTAAAAATCGTATTTGTATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGTTCCTATCACTGAGCAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACAGGCTGCAGTAACAAATCCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGGGTTTCTTTGAAGTTCTTGTTATTGCAAATGAATGCGATCGAGCAAAACCATTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

128

Amino Acids

14.28

Weight (kDa)

5.64

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AciI	CCGC	2 cut(s)	65, 232
AclWI	GGATC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	98, 245, 259, 338
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	2 cut(s)	177, 301
AluI	AGCT	2 cut(s)	177, 301
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	152, 200
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	167
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	253
Bsh1285I	CGRYCG	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	61, 364
BspACI	CCGC	2 cut(s)	65, 232
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	61, 364
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	20, 201
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	64, 367
BstMBI	GATC	2 cut(s)	61, 364
BstMCI	CGRYCG	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	3 cut(s)	128, 162, 314
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	5 cut(s)	177, 219, 255, 266, 301
CviKI_1	RGCY	5 cut(s)	177, 219, 255, 266, 301
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	63, 366
DpnII	GATC	2 cut(s)	61, 364
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	179
FaiI	YATR	4 cut(s)	38, 78, 212, 225
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	174
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	61, 196
Hpy188III	TCNNGA	2 cut(s)	98, 384
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	20, 201
HpyCH4V	TGCA	3 cut(s)	165, 269, 353
HpyF3I	CTNAG	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	61, 364
LmnI	GCTCC	2 cut(s)	72, 174
LpnPI	CCDG	4 cut(s)	248, 302, 311, 338
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	152, 200
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	63, 366
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	61, 364
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	2 cut(s)	165, 332
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	326
NdeII	GATC	2 cut(s)	61, 364
NlaIV	GGNNCC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	61
PvuI	CGATCG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	61, 364
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	5 cut(s)	109, 179, 211, 303, 324
SfaNI	GCATC	2 cut(s)	152, 200
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	65, 232
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	20, 201
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	135, 162, 321
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	132, 227, 372
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	135, 162, 321
VpaK11BI	GGWCC	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.