Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

17376301 .. 17379673

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCAAATATTTCATCAAATTCTCTCCCAGCTGTTGATGACAGCAAATCCTCCCTGGCTTTTCTCGCTCCTCTTGAAGCAATTCTGTTCGATATCGATGGAACATTGTGTGATTCAGATCCCCTCCATTATCACGCTTTCCGCGAAATGCTTCAAGAAGTAGGCTATAATGGAGGGGTTCCTATCTCTGAGGAATTCTACAGTGAACATATTAGTGGAAAGAATAATGAGTATCTTTGCGGTACCATCTTTCCCGATTGGGAAATCAAAAGAGCAAGAAAATTCTTGGAAGATAAGGAAGCCTTTTTCCGAAGATTGGCATCTGAAGAATTGGAACCTGTCAAGGGCCTTGACAAGTTGTGCAAATGGATTGAAAAGCAAGGCTTGAGACGGGCTGCGGTGACAAATTCTCCACGAGCAAGTGGGGAGCTAATGATATCATCATTAGGGCTCACAGACTTCTTTGAAATTCTTGTTATTGGAAATGAATGTGATCGAGCAAAACCATTTCCAGACCCTTATTTGAAGGCTCTTGAAACACTTAAAGTGTCACATGAGCATACTTTTATCTTTGAGGATTCCGTTTCAGGAACAACAGCTGGAGTGGCAGCTGGAATGCCAGTTCTTGGTATAGCTACAAGGAATCCTGGGACGTCATTGATTAACGCTGGAGTCTCCTTTGTTATTAAAGATTTTGAGGACCCGAAATTGTGGGAAGCACTGGAAAAGTTGGAGAAGAAGCCAGAGGCAACGGCAGAGGCAATAACAGTTGCAATTGCAACTCCAACTCCCAGTAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

268

Amino Acids

29.39

Weight (kDa)

4.86

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	142, 240, 398
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	5 cut(s)	19, 194, 281, 406, 468
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	653
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	316, 344, 626
AgsI	TTSAA	6 cut(s)	77, 155, 374, 467, 526, 536
AjnI	CCWGG	2 cut(s)	54, 646
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	32, 430, 599, 611, 635
AluI	AGCT	5 cut(s)	32, 430, 599, 611, 635
Alw26I	GTCTC	2 cut(s)	382, 679
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	395, 608
ApoI	RAATTY	5 cut(s)	19, 194, 281, 406, 468
Asp700I	GAANNNNTTC	2 cut(s)	81, 150
Asp718I	GGTACC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	346, 700
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	382, 620
BccI	CCATC	2 cut(s)	92, 254
BceAI	ACGGC	1 cut(s)	768
BciT130I	CCWGG	2 cut(s)	56, 648
BcoDI	GTCTC	2 cut(s)	382, 679
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	2 cut(s)	396, 609
BlsI	GCNGC	2 cut(s)	397, 610
Bme1390I	CCNGG	2 cut(s)	56, 648
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	346, 700
BmiI	GGNNCC	4 cut(s)	180, 244, 336, 702
BmrFI	CCNGG	2 cut(s)	56, 648
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	786
BpmI	CTGGAG	2 cut(s)	621, 690
BpuEI	CTTGAG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	117, 319
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	54, 647
BsaXI	ACNNNNNCTCC	4 cut(s)	394, 424, 772, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 344, 626
Bse1I	ACTGG	3 cut(s)	620, 726, 792
Bse8I	GATNNNNATC	2 cut(s)	117, 319
BseBI	CCWGG	2 cut(s)	56, 648
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	54, 647
BseJI	GATNNNNATC	2 cut(s)	117, 319
BseLI	CCNNNNNNNGG	3 cut(s)	316, 344, 626
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	620, 726, 792
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	382, 620
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	3 cut(s)	316, 344, 626
BsmAI	GTCTC	2 cut(s)	382, 679
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	118, 493
BspACI	CCGC	3 cut(s)	142, 240, 398
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	181
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	180, 244, 336, 702
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	620, 726, 792
BssECI	CCNNGG	2 cut(s)	54, 647
BssMI	GATC	2 cut(s)	118, 493
BssNI	GRCGYC	1 cut(s)	653
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	56, 648
Bst4CI	ACNGT	2 cut(s)	203, 769
BstACI	GRCGYC	1 cut(s)	653
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	121, 496
BstMAI	GTCTC	2 cut(s)	382, 679
BstMBI	GATC	2 cut(s)	118, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 605
BstNI	CCWGG	2 cut(s)	56, 648
BstSCI	CCNGG	2 cut(s)	54, 646
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	382, 620
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	208, 719
Cfr13I	GGNCC	2 cut(s)	346, 700
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	120, 495
DpnII	GATC	2 cut(s)	118, 493
Eco24I	GRGCYC	1 cut(s)	453
Eco32I	GATATC	2 cut(s)	94, 438
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	346, 700
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	54, 646
EcoRV	GATATC	2 cut(s)	94, 438
EcoT38I	GRGCYC	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	1 cut(s)	557
FaiI	YATR	7 cut(s)	168, 210, 555, 561, 632, 800, 802
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 368, 400
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	396, 609
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	396, 609
GluI	GCNGC	2 cut(s)	396, 609
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	2 cut(s)	621, 690
HaeIII	GGCC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	4 cut(s)	113, 578, 643, 672
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	4 cut(s)	118, 190, 311, 325
Hpy188III	TCNNGA	6 cut(s)	74, 155, 254, 512, 533, 588
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	2 cut(s)	203, 769
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	3 cut(s)	363, 773, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 605
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	1 cut(s)	557
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	118, 493
LmnI	GCTCC	2 cut(s)	73, 427
Lsp1109I	GCAGC	2 cut(s)	382, 620
LweI	GCATC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	400, 549
MalI	GATC	2 cut(s)	120, 495
MboI	GATC	2 cut(s)	118, 493
MboII	GAAGA	4 cut(s)	302, 324, 338, 748
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	9 cut(s)	19, 81, 194, 281, 329, 406, 468, 707, 774
MlyI	GAGTC	1 cut(s)	681
MmeI	TCCRAC	1 cut(s)	711
MnlI	CCTC	9 cut(s)	61, 81, 134, 167, 184, 568, 691, 739, 751
MroXI	GAANNNNTTC	2 cut(s)	81, 150
MseI	TTAA	3 cut(s)	543, 663, 687
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	3 cut(s)	32, 599, 611
MspR9I	CCNGG	2 cut(s)	56, 648
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	56, 648
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	65, 605
NdeII	GATC	2 cut(s)	118, 493
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	4 cut(s)	180, 244, 336, 702
NmuCI	GTSAC	2 cut(s)	400, 549
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	621
PdmI	GAANNNNTTC	2 cut(s)	81, 150
PfeI	GAWTC	3 cut(s)	113, 578, 643
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	397, 610
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	54, 646
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	54, 646
PspN4I	GGNNCC	4 cut(s)	180, 244, 336, 702
PspPI	GGNCC	2 cut(s)	346, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	3 cut(s)	32, 599, 611
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	543, 663, 687
SatI	GCNGC	2 cut(s)	396, 609
Sau3AI	GATC	2 cut(s)	118, 493
Sau96I	GGNCC	2 cut(s)	346, 700
SchI	GAGTC	1 cut(s)	681
ScrFI	CCNGG	2 cut(s)	56, 648
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	7 cut(s)	34, 340, 432, 601, 613, 637, 656
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	9 cut(s)	19, 81, 194, 281, 329, 406, 468, 707, 774
SsiI	CCGC	3 cut(s)	142, 240, 398
SspI	AATATT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	54, 646
TaaI	ACNGT	2 cut(s)	203, 769
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	3 cut(s)	90, 96, 496
TasI	AATT	9 cut(s)	19, 81, 194, 281, 329, 406, 468, 707, 774
TfiI	GAWTC	3 cut(s)	113, 578, 643
Tru1I	TTAA	3 cut(s)	543, 663, 687
Tru9I	TTAA	3 cut(s)	543, 663, 687
TscAI	CASTG	2 cut(s)	208, 726
TseFI	GTSAC	2 cut(s)	400, 549
TseI	GCWGC	2 cut(s)	395, 608
Tsp45I	GTSAC	2 cut(s)	400, 549
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	208, 726
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	5 cut(s)	19, 194, 281, 406, 468
XmnI	GAANNNNTTC	2 cut(s)	81, 150
ZraI	GACGTC	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.