Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

36072047 .. 36072423

Gene Structure 377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGGGTTTCTTTGAAGTTCTTGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGAACTTAATGTGTCAAATAAGCATGCTTTTGTCTTTGAGCTGGAATGCCGGTGGTCGGTTTGGGCACAAGGAACCCTGACAGTTTACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

6.72

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	3 - 78	3e-10	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	10 - 78	1e-08	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	35, 49, 128, 187
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	91, 191, 238
AluI	AGCT	3 cut(s)	91, 191, 238
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	89, 222
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	89, 222
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	6 cut(s)	9, 45, 56, 91, 191, 238
CviKI_1	RGCY	6 cut(s)	9, 45, 56, 91, 191, 238
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	15, 222
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	289
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	1 cut(s)	224
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	59, 71, 143
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	92, 101, 128, 186, 224, 260, 287
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	4 cut(s)	93, 114, 193, 240
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	109
SphI	GCATGC	1 cut(s)	224
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	17, 162
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.