Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000259.1

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

216781 .. 217296

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000259.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgaagggcttacataatttgcgggaatggattgaaaatcaaggtttgaaacgggctgcagtaacaaatgcaccaagaccaaatggcgagctattagtatcagcactggacctcctgagattctttgaagttctcgttattgcaaatgaatgtgatcgagcaaaaccatttcctgacccttacttgaaagctctccaagcacttaatgtgtcaaataagcatgctttcgtctttgaggattctgtctctggagtaaaagctggagtggcagctggaatgccggtggtgggtttgggcacaaggaaccctgacagtttactgctagatgctggagcctccttcgttattaaagattttggtgacccaaaattgtgggaagcactggaagagttggagaagaaagcagtgaaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

138

Amino Acids

15.07

Weight (kDa)

6.12

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	35, 49, 128, 187
AluBI	AGCT	4 cut(s)	91, 191, 260, 272
AluI	AGCT	4 cut(s)	91, 191, 260, 272
Alw26I	GTCTC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	56, 269
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	43, 281
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	57, 270
BlsI	GCNGC	2 cut(s)	58, 271
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	305, 334
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	3 cut(s)	270, 282, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	111, 387
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	111, 387
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	43, 281
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	305, 334
BspMAI	CTGCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	111, 387
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	89, 222
BstDEI	CTNAG	1 cut(s)	116
BstEII	GGTNACC	1 cut(s)	359
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 266
BstNSI	RCATGY	1 cut(s)	224
BstPI	GGTNACC	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	43, 281
BstXI	CCANNNNNNTGG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	104, 380, 411
Cac8I	GCNNGC	2 cut(s)	89, 222
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	7 cut(s)	9, 56, 91, 191, 260, 272, 335
CviKI_1	RGCY	7 cut(s)	9, 56, 91, 191, 260, 272, 335
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	15, 222
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	57, 270
Fsp4HI	GCNGC	2 cut(s)	57, 270
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	2 cut(s)	57, 270
GsuI	CTGGAG	3 cut(s)	270, 282, 351
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	120, 239
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	115, 173, 249
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	59, 71, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 266
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	2 cut(s)	43, 281
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	61, 359
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	398, 409
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	2 cut(s)	16, 368
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	3 cut(s)	122, 229, 346
MseI	TTAA	2 cut(s)	204, 348
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	197, 266
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	305, 334
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	120, 239
PkrI	GCNGC	2 cut(s)	58, 271
PspEI	GGTNACC	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	305, 334
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	204, 348
SatI	GCNGC	2 cut(s)	57, 270
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	46, 93, 114, 193, 262, 274
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	109
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	16, 368
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	16, 368
TfiI	GAWTC	2 cut(s)	120, 239
Tru1I	TTAA	2 cut(s)	204, 348
Tru9I	TTAA	2 cut(s)	204, 348
TscAI	CASTG	3 cut(s)	111, 387, 411
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	56, 269
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	17, 162
TspRI	CASTG	3 cut(s)	111, 387, 411
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.