Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

52000070 .. 52001468

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGGCCTGAATCACTTCCCATTATGTTGTGGCAGTAAATGTTCTCTAGCATTTGTCACTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATGGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTATGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAATTTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTAGTTATTGCAAATGAATGTGATAGAGCAAAACCATTTCCTGACCCCTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGATTTTGTCTCTGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGCTGGGTTTAGGCACAAGGAACCCTGACAGTTTACTGCTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACAGGAAGAGTTGGAGAAGAAAGCAGTGAAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

249

Amino Acids

27.95

Weight (kDa)

4.86

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	24 - 203	1.9e-19	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	26 - 208	2.7e-25	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	118
AciI	CCGC	2 cut(s)	116, 355
AclWI	GGATC	2 cut(s)	107, 264
AcsI	RAATTY	2 cut(s)	188, 274
AfiI	CCNNNNNNNGG	3 cut(s)	310, 338, 620
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	149, 284, 368, 382, 461, 520
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	5 cut(s)	229, 424, 524, 593, 605
AluI	AGCT	5 cut(s)	229, 424, 524, 593, 605
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	2 cut(s)	107, 264
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	389, 602
ApoI	RAATTY	2 cut(s)	188, 274
Asp700I	GAANNNNTTC	3 cut(s)	17, 75, 144
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	376, 614
BccI	CCATC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	3 cut(s)	50, 467, 656
BfmI	CTRYAG	1 cut(s)	390
BisI	GCNGC	2 cut(s)	390, 603
BlsI	GCNGC	2 cut(s)	391, 604
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	174, 638, 667
BmsI	GCATC	3 cut(s)	204, 323, 649
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	3 cut(s)	603, 615, 684
BsaBI	GATNNNNATC	3 cut(s)	111, 255, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 338, 620
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	3 cut(s)	111, 255, 313
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	3 cut(s)	111, 255, 313
BseLI	CCNNNNNNNGG	3 cut(s)	310, 338, 620
BseMII	CTCAG	2 cut(s)	174, 440
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	54, 239
BseXI	GCAGC	2 cut(s)	376, 614
BseYI	CCCAGC	1 cut(s)	619
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	310, 338, 620
BsmAI	GTCTC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	112, 256
BspACI	CCGC	2 cut(s)	116, 355
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	175, 441
BspLI	GGNNCC	3 cut(s)	174, 638, 667
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	2 cut(s)	107, 264
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	613
BssMI	GATC	2 cut(s)	112, 256
Bst4CI	ACNGT	2 cut(s)	324, 647
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	7, 422, 555
BstDEI	CTNAG	2 cut(s)	183, 449
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	2 cut(s)	115, 259
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	2 cut(s)	112, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 599
BstNSI	RCATGY	2 cut(s)	301, 557
BstPI	GGTNACC	1 cut(s)	692
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	376, 614
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	112, 256
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	2 cut(s)	112, 256
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	4 cut(s)	180, 214, 437, 744
Cac8I	GCNNGC	3 cut(s)	7, 422, 555
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	442
CviAII	CATG	3 cut(s)	99, 298, 554
DdeI	CTNAG	2 cut(s)	183, 449
DpnI	GATC	2 cut(s)	114, 258
DpnII	GATC	2 cut(s)	112, 256
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	3 cut(s)	102, 301, 557
FaiI	YATR	9 cut(s)	28, 89, 100, 129, 234, 299, 335, 348, 555
FatI	CATG	3 cut(s)	98, 297, 553
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	390, 603
FokI	GGATG	1 cut(s)	226
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	390, 603
FspBI	CTAG	3 cut(s)	50, 467, 656
GluI	GCNGC	2 cut(s)	390, 603
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	3 cut(s)	603, 615, 684
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	3 cut(s)	102, 301, 557
HinfI	GANTC	2 cut(s)	13, 107
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	650
Hpy188I	TCNGA	3 cut(s)	112, 305, 319
Hpy188III	TCNNGA	6 cut(s)	68, 149, 248, 448, 506, 582
Hpy8I	GTNNAC	1 cut(s)	650
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	324, 647
HpyCH4V	TGCA	4 cut(s)	217, 392, 404, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 599
HpyF3I	CTNAG	2 cut(s)	183, 449
Hsp92II	CATG	3 cut(s)	102, 301, 557
Kzo9I	GATC	2 cut(s)	112, 256
LmnI	GCTCC	3 cut(s)	123, 226, 665
Lsp1109I	GCAGC	2 cut(s)	376, 614
LweI	GCATC	3 cut(s)	204, 323, 649
MaeI	CTAG	3 cut(s)	50, 467, 656
MaeIII	GTNAC	3 cut(s)	58, 394, 692
MalI	GATC	2 cut(s)	114, 258
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	112, 256
MboII	GAAGA	6 cut(s)	184, 296, 305, 318, 731, 742
MflI	RGATCY	2 cut(s)	112, 256
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	75, 188, 274, 701
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	6 cut(s)	75, 178, 217, 455, 562, 679
MroXI	GAANNNNTTC	3 cut(s)	17, 75, 144
MseI	TTAA	3 cut(s)	162, 537, 681
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	615
MwoI	GCNNNNNNNGC	2 cut(s)	530, 599
NdeII	GATC	2 cut(s)	112, 256
NlaIII	CATG	3 cut(s)	102, 301, 557
NlaIV	GGNNCC	3 cut(s)	174, 638, 667
NmuCI	GTSAC	2 cut(s)	58, 692
NspI	RCATGY	2 cut(s)	301, 557
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	297
PctI	GAATGC	1 cut(s)	615
PdmI	GAANNNNTTC	3 cut(s)	17, 75, 144
PfeI	GAWTC	2 cut(s)	13, 107
PkrI	GCNGC	2 cut(s)	391, 604
PscI	ACATGT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	174, 638, 667
PspPI	GGNCC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	112, 256
PvuII	CAGCTG	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	162, 537, 681
SatI	GCNGC	2 cut(s)	390, 603
Sau3AI	GATC	2 cut(s)	112, 256
Sau96I	GGNCC	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	160, 231, 334, 426, 447, 526, 595, 607
SfaNI	GCATC	3 cut(s)	204, 323, 649
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	126
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	75, 188, 274, 701
SsiI	CCGC	2 cut(s)	116, 355
SspMI	CTAG	3 cut(s)	50, 467, 656
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	324, 647
TaqI	TCGA	1 cut(s)	69
TasI	AATT	4 cut(s)	75, 188, 274, 701
TfiI	GAWTC	2 cut(s)	13, 107
Tru1I	TTAA	3 cut(s)	162, 537, 681
Tru9I	TTAA	3 cut(s)	162, 537, 681
TscAI	CASTG	4 cut(s)	187, 214, 444, 744
TseFI	GTSAC	2 cut(s)	58, 692
TseI	GCWGC	2 cut(s)	389, 602
Tsp45I	GTSAC	2 cut(s)	58, 692
TspDTI	ATGAA	3 cut(s)	184, 350, 495
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	4 cut(s)	187, 214, 444, 744
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	188, 274
XceI	RCATGY	2 cut(s)	301, 557
XmnI	GAANNNNTTC	3 cut(s)	17, 75, 144
XspI	CTAG	3 cut(s)	50, 467, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.