Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

17247302 .. 17249127

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCATTTGCCGAAGAAAAAAAGAAAACTATATATCATAGTTGCAACCTCACTCGACATAGCTTAACTTTACCTCTCTCACCACCACCACCACCAACGATGTCCAATATTTCATCAACTCCTCTCCCACTCGATAGGAAATGTTCGCTTGCCCTTATCGCTCCTCTGGAAGCAATTCTATTCGACATTGATGGAACGTTGTGTGATTCAGATCCCCTCCATTACTATGCTTTCCGTGAAATGCTTCAAGAGGTAGGCTTTAATGGAGGGATTCCTATCACTGAGGAATTCTACAGTGAACATTTTAGTGGAAAGAACAATGAGTATCTTTGCAGTACCGTCTTTCATGACTGGGATCTCCAAACAGCAAGGAAATTTTTGGACGACAAGGAAGCCATGTTCCGGAGATTGGCTGCTGAACAATTAGAGCCTGTCAAGGGTCTGGATAAGTTGCGCAAGTGGATCGAAAATCAAGGCTTCAGAAGGGCTGCTGTAACAAATTCTCCAAGAGCTAGTGGCGAGCTAATGATATCATCTTTGGGGCTCTCGGATTTCTTTGAAATTCTTGTTATCGGAGTCGAATGCACAAGGGCAAAACCATTTCCTGACCCTTACTTGAAGGCTCTCGAAACACTTCAAGTGTCTCACAAGCATGCTTTCATCTTTGAGGATTCTGTTTCTGGAGTGAAAGCTGGAGTAGCAGCTGGAATGCCAGTAGTTGGTTTAGGCACAAGGAATCCCGAGACATGGTTGACTGATGCCGGAGCCACTTTCGTTATTAGAGATTTTGAGGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAGGAAGGCAGAGGCAACAACAGTTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

287

Amino Acids

31.98

Weight (kDa)

5.19

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccIII	TCCGGA	1 cut(s)	402
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	3 cut(s)	206, 363, 470
AcsI	RAATTY	4 cut(s)	287, 374, 499, 561
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	5 cut(s)	402, 409, 437, 719, 747
AgsI	TTSAA	4 cut(s)	248, 560, 619, 638
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AluBI	AGCT	5 cut(s)	63, 512, 523, 692, 704
AluI	AGCT	5 cut(s)	63, 512, 523, 692, 704
Alw26I	GTCTC	2 cut(s)	648, 737
AlwI	GGATC	3 cut(s)	206, 363, 470
Ama87I	CYCGRG	1 cut(s)	740
Aor13HI	TCCGGA	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	413, 488, 701
ApoI	RAATTY	4 cut(s)	287, 374, 499, 561
Asp700I	GAANNNNTTC	3 cut(s)	174, 243, 633
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	400, 475, 713
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BcoDI	GTCTC	2 cut(s)	648, 737
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	3 cut(s)	414, 489, 702
BlsI	GCNGC	3 cut(s)	415, 490, 703
Bme18I	GGWCC	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	766, 795
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	748
BmuI	ACTGGG	1 cut(s)	361
BpmI	CTGGAG	2 cut(s)	702, 714
BsaBI	GATNNNNATC	2 cut(s)	210, 275
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	5 cut(s)	402, 409, 437, 719, 747
Bse1I	ACTGG	3 cut(s)	356, 713, 819
Bse8I	GATNNNNATC	2 cut(s)	210, 275
BseAI	TCCGGA	1 cut(s)	402
BseJI	GATNNNNATC	2 cut(s)	210, 275
BseLI	CCNNNNNNNGG	5 cut(s)	402, 409, 437, 719, 747
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	3 cut(s)	356, 713, 819
BseRI	GAGGAG	2 cut(s)	111, 153
BseXI	GCAGC	3 cut(s)	400, 475, 713
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	403, 762
BslI	CCNNNNNNNGG	5 cut(s)	402, 409, 437, 719, 747
BsmAI	GTCTC	2 cut(s)	648, 737
BsmI	GAATGC	2 cut(s)	587, 714
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	211, 355, 462
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	766, 795
BspPI	GGATC	3 cut(s)	206, 363, 470
BsrI	ACTGG	3 cut(s)	356, 713, 819
BssMI	GATC	3 cut(s)	211, 355, 462
Bst4CI	ACNGT	3 cut(s)	296, 340, 850
Bst6I	CTCTTC	1 cut(s)	813
BstC8I	GCNNGC	3 cut(s)	150, 521, 654
BstDEI	CTNAG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	214, 358, 465
BstMAI	GTCTC	2 cut(s)	648, 737
BstMBI	GATC	3 cut(s)	211, 355, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 698
BstNSI	RCATGY	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	400, 475, 713
BstX2I	RGATCY	2 cut(s)	211, 355
BstXI	CCANNNNNNTGG	1 cut(s)	804
BstYI	RGATCY	2 cut(s)	211, 355
BtsIMutI	CAGTG	3 cut(s)	279, 301, 812
Cac8I	GCNNGC	3 cut(s)	150, 521, 654
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	4 cut(s)	347, 397, 653, 747
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	213, 357, 464
DpnII	GATC	3 cut(s)	211, 355, 462
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	4 cut(s)	350, 400, 656, 750
FaiI	YATR	9 cut(s)	32, 34, 39, 60, 228, 348, 398, 654, 748
FatI	CATG	4 cut(s)	346, 396, 652, 746
Fnu4HI	GCNGC	3 cut(s)	414, 489, 702
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	3 cut(s)	414, 489, 702
FspBI	CTAG	1 cut(s)	513
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	414, 489, 702
GsuI	CTGGAG	2 cut(s)	702, 714
HapII	CCGG	2 cut(s)	403, 762
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	4 cut(s)	350, 400, 656, 750
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	5 cut(s)	206, 271, 576, 671, 736
HpaII	CCGG	2 cut(s)	403, 762
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	299, 753
Hpy188I	TCNGA	4 cut(s)	211, 482, 550, 575
Hpy188III	TCNNGA	9 cut(s)	167, 248, 347, 403, 443, 605, 626, 681, 740
Hpy8I	GTNNAC	2 cut(s)	299, 753
HpyAV	CCTTC	3 cut(s)	477, 613, 826
HpyCH4III	ACNGT	3 cut(s)	296, 340, 850
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	45, 333, 585, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 698
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	350, 400, 656, 750
HspAI	GCGC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	211, 355, 462
LmnI	GCTCC	2 cut(s)	166, 764
Lsp1109I	GCAGC	3 cut(s)	400, 475, 713
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	3 cut(s)	213, 357, 464
MboI	GATC	3 cut(s)	211, 355, 462
MboII	GAAGA	2 cut(s)	26, 830
MflI	RGATCY	2 cut(s)	211, 355
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	7 cut(s)	174, 287, 374, 422, 499, 561, 800
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	804
MroI	TCCGGA	1 cut(s)	402
MroXI	GAANNNNTTC	3 cut(s)	174, 243, 633
MseI	TTAA	2 cut(s)	65, 261
MslI	CAYNNNNRTG	3 cut(s)	225, 306, 651
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	403, 762
Mva1269I	GAATGC	2 cut(s)	587, 714
MwoI	GCNNNNNNNGC	2 cut(s)	158, 698
NdeII	GATC	3 cut(s)	211, 355, 462
NlaIII	CATG	4 cut(s)	350, 400, 656, 750
NlaIV	GGNNCC	2 cut(s)	766, 795
NsbI	TGCGCA	1 cut(s)	455
NspI	RCATGY	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	656
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	2 cut(s)	587, 714
PdmI	GAANNNNTTC	3 cut(s)	174, 243, 633
PfeI	GAWTC	4 cut(s)	206, 271, 671, 736
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	415, 490, 703
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	793
Psp1406I	AACGTT	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	793
PspN4I	GGNNCC	2 cut(s)	766, 795
PspPI	GGNCC	1 cut(s)	793
PspPPI	RGGWCCY	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	211, 355
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	3 cut(s)	225, 306, 651
SaqAI	TTAA	2 cut(s)	65, 261
SatI	GCNGC	3 cut(s)	414, 489, 702
Sau3AI	GATC	3 cut(s)	211, 355, 462
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	9 cut(s)	51, 65, 76, 200, 255, 514, 525, 694, 706
SfaNI	GCATC	1 cut(s)	748
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	3 cut(s)	225, 306, 651
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	7 cut(s)	174, 287, 374, 422, 499, 561, 800
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	296, 340, 850
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	6 cut(s)	55, 132, 183, 465, 579, 627
TasI	AATT	7 cut(s)	174, 287, 374, 422, 499, 561, 800
TfiI	GAWTC	4 cut(s)	206, 271, 671, 736
Tru1I	TTAA	2 cut(s)	65, 261
Tru9I	TTAA	2 cut(s)	65, 261
TscAI	CASTG	3 cut(s)	286, 301, 819
TseI	GCWGC	3 cut(s)	413, 488, 701
TspDTI	ATGAA	3 cut(s)	102, 335, 649
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	286, 301, 819
Van91I	CCANNNNNTGG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	4 cut(s)	287, 374, 499, 561
XceI	RCATGY	1 cut(s)	656
XmnI	GAANNNNTTC	3 cut(s)	174, 243, 633
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.