Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

37242155 .. 37246017

Gene Structure 3863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTTCAAGAAGTAGGTTTTAATGCTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGTTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGTGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTCGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGGTGGGTTTGGGCACAAGGAACCCTGACAGTTTACTGCTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAAGAAAGCAGTGAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

5.02

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	14 - 161	2.3e-19	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	41 - 156	2.4e-14	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	47, 134
AfiI	CCNNNNNNNGG	3 cut(s)	169, 197, 479
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	6 cut(s)	8, 143, 227, 241, 320, 379
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	88, 283, 383, 452, 464
AluI	AGCT	5 cut(s)	88, 283, 383, 452, 464
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	248, 461
ApoI	RAATTY	2 cut(s)	47, 134
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	290, 563
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	235, 473
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	249, 462
BlsI	GCNGC	2 cut(s)	250, 463
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	33, 497, 526
BmsI	GCATC	3 cut(s)	63, 182, 508
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	474, 543
BsaBI	GATNNNNATC	2 cut(s)	114, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 197, 479
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	303, 579
Bse8I	GATNNNNATC	2 cut(s)	114, 172
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	2 cut(s)	114, 172
BseLI	CCNNNNNNNGG	3 cut(s)	169, 197, 479
BseMII	CTCAG	3 cut(s)	33, 299, 453
BseNI	ACTGG	2 cut(s)	303, 579
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	235, 473
BseYI	CCCAGC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	169, 197, 479
BsmAI	GTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	90, 491
Bsp143I	GATC	2 cut(s)	115, 346
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	3 cut(s)	34, 300, 452
BspLI	GGNNCC	3 cut(s)	33, 497, 526
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	303, 579
BssAI	RCCGGY	1 cut(s)	472
BssMI	GATC	2 cut(s)	115, 346
Bst4CI	ACNGT	2 cut(s)	183, 506
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	42, 308, 439
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	118, 349
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	115, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 458
BstNSI	RCATGY	2 cut(s)	160, 416
BstPI	GGTNACC	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	235, 473
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	5 cut(s)	39, 73, 296, 572, 603
Cac8I	GCNNGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	2 cut(s)	157, 413
CviJI	RGCY	8 cut(s)	88, 201, 248, 283, 383, 452, 464, 527
CviKI_1	RGCY	8 cut(s)	88, 201, 248, 283, 383, 452, 464, 527
DdeI	CTNAG	3 cut(s)	42, 308, 439
DpnI	GATC	2 cut(s)	117, 348
DpnII	GATC	2 cut(s)	115, 346
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	2 cut(s)	160, 416
FaiI	YATR	4 cut(s)	158, 194, 207, 414
FatI	CATG	2 cut(s)	156, 412
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	249, 462
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	249, 462
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	2 cut(s)	249, 462
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	474, 543
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	2 cut(s)	160, 416
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	290, 563
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	2 cut(s)	164, 178
Hpy188III	TCNNGA	5 cut(s)	8, 107, 307, 365, 441
Hpy8I	GTNNAC	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	183, 506
HpyCH4V	TGCA	4 cut(s)	76, 251, 263, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 458
HpyF3I	CTNAG	3 cut(s)	42, 308, 439
Hsp92II	CATG	2 cut(s)	160, 416
Kzo9I	GATC	2 cut(s)	115, 346
LmnI	GCTCC	2 cut(s)	85, 524
Lsp1109I	GCAGC	2 cut(s)	235, 473
LweI	GCATC	3 cut(s)	63, 182, 508
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	253, 551
MalI	GATC	2 cut(s)	117, 348
MboI	GATC	2 cut(s)	115, 346
MboII	GAAGA	6 cut(s)	43, 155, 164, 177, 590, 601
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	90, 491
MluCI	AATT	3 cut(s)	47, 134, 560
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	5 cut(s)	37, 76, 314, 421, 538
MseI	TTAA	4 cut(s)	21, 396, 540, 607
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	389, 458
NdeII	GATC	2 cut(s)	115, 346
NlaIII	CATG	2 cut(s)	160, 416
NlaIV	GGNNCC	3 cut(s)	33, 497, 526
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	2 cut(s)	160, 416
PaeI	GCATGC	1 cut(s)	416
PciI	ACATGT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	250, 463
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	33, 497, 526
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	21, 396, 540, 607
SatI	GCNGC	2 cut(s)	249, 462
Sau3AI	GATC	2 cut(s)	115, 346
Sau96I	GGNCC	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	90, 491
SetI	ASST	9 cut(s)	19, 90, 193, 238, 285, 306, 385, 454, 466
SfaNI	GCATC	3 cut(s)	63, 182, 508
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	301
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	3 cut(s)	47, 134, 560
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	183, 506
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	47, 134, 560
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	4 cut(s)	21, 396, 540, 607
Tru9I	TTAA	4 cut(s)	21, 396, 540, 607
TscAI	CASTG	5 cut(s)	46, 73, 303, 579, 603
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	248, 461
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	43, 209, 354
TspRI	CASTG	5 cut(s)	46, 73, 303, 579, 603
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	2 cut(s)	47, 134
XceI	RCATGY	2 cut(s)	160, 416
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.