Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

25078049 .. 25081911

Gene Structure 3863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTAGCTCTACCTCAGCTTCTTCACTATCACCACCACCTCTTCTCCCACCAATTCCCCAAAACCCATTTGCAGAGACACAACCTCACTAAACGAGGCTCTACCTTTCTCACCAGGATGTCCATTTCATCAGACCCTCGCCCACTGGACAGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCAAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGCTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGTTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGTGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTCGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGTTTGGCTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

232

Amino Acids

26.75

Weight (kDa)

6.12

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	62 - 227	5.4e-18	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	64 - 227	5.3e-22	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	230, 469
AclWI	GGATC	2 cut(s)	221, 378
AcsI	RAATTY	2 cut(s)	302, 389
AfiI	CCNNNNNNNGG	2 cut(s)	424, 452
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	263, 398, 482, 496, 575, 634
AjnI	CCWGG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	8, 19, 343, 538, 638
AluI	AGCT	5 cut(s)	8, 19, 343, 538, 638
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	221, 378
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	302, 389
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	3 cut(s)	23, 103, 545
AvaII	GGWCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	288, 692
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	318, 437
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	3 cut(s)	225, 369, 427
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 543, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 452
Bse1I	ACTGG	2 cut(s)	150, 558
Bse8I	GATNNNNATC	3 cut(s)	225, 369, 427
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	123, 333
BseJI	GATNNNNATC	3 cut(s)	225, 369, 427
BseLI	CCNNNNNNNGG	2 cut(s)	424, 452
BseMII	CTCAG	3 cut(s)	29, 288, 554
BseNI	ACTGG	2 cut(s)	150, 558
BseRI	GAGGAG	2 cut(s)	168, 353
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	424, 452
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	226, 370, 601
BspACI	CCGC	2 cut(s)	230, 469
BspCNI	CTCAG	3 cut(s)	28, 289, 555
BspLI	GGNNCC	2 cut(s)	288, 692
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	221, 378
BsrBI	CCGCTC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	150, 558
BssMI	GATC	3 cut(s)	226, 370, 601
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	152, 438
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	15, 297, 563
BstF5I	GGATG	2 cut(s)	123, 333
BstKTI	GATC	3 cut(s)	229, 373, 604
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	226, 370, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 644
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	415, 671
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	226, 370
BstYI	RGATCY	2 cut(s)	226, 370
BtsCI	GGATG	2 cut(s)	123, 333
BtsIMutI	CAGTG	4 cut(s)	143, 294, 328, 551
Cac8I	GCNNGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	556
CviAII	CATG	3 cut(s)	412, 668, 696
CviJI	RGCY	9 cut(s)	8, 19, 99, 343, 456, 503, 538, 638, 691
CviKI_1	RGCY	9 cut(s)	8, 19, 99, 343, 456, 503, 538, 638, 691
DdeI	CTNAG	3 cut(s)	15, 297, 563
DpnI	GATC	3 cut(s)	228, 372, 603
DpnII	GATC	3 cut(s)	226, 370, 601
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	3 cut(s)	415, 671, 699
FaiI	YATR	7 cut(s)	203, 243, 413, 449, 462, 669, 697
FatI	CATG	3 cut(s)	411, 667, 695
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	130, 340
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	504
GsaI	CCCAGC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	415, 671, 699
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	3 cut(s)	23, 103, 545
Hpy188I	TCNGA	4 cut(s)	133, 226, 419, 433
Hpy188III	TCNNGA	4 cut(s)	263, 362, 562, 620
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	2 cut(s)	152, 438
HpyCH4V	TGCA	5 cut(s)	73, 331, 506, 518, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 644
HpyF3I	CTNAG	3 cut(s)	15, 297, 563
Hsp92II	CATG	3 cut(s)	415, 671, 699
Kzo9I	GATC	3 cut(s)	226, 370, 601
LmnI	GCTCC	4 cut(s)	181, 237, 340, 696
LpnPI	CCDG	8 cut(s)	100, 127, 131, 267, 375, 539, 575, 633
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	318, 437
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	228, 372, 603
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	3 cut(s)	226, 370, 601
MboII	GAAGA	6 cut(s)	14, 34, 298, 410, 419, 432
MflI	RGATCY	2 cut(s)	226, 370
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	53, 189, 302, 389
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	276, 651
MslI	CAYNNNNRTG	2 cut(s)	116, 240
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	173, 644
NdeII	GATC	3 cut(s)	226, 370, 601
NlaIII	CATG	3 cut(s)	415, 671, 699
NlaIV	GGNNCC	2 cut(s)	288, 692
NspI	RCATGY	2 cut(s)	415, 671
PaeI	GCATGC	1 cut(s)	671
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	288, 692
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	226, 370
RseI	CAYNNNNRTG	2 cut(s)	116, 240
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	276, 651
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	3 cut(s)	226, 370, 601
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	318, 437
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	116, 240
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	4 cut(s)	53, 189, 302, 389
SsiI	CCGC	2 cut(s)	230, 469
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	152, 438
TaqI	TCGA	1 cut(s)	604
TasI	AATT	4 cut(s)	53, 189, 302, 389
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	276, 651
Tru9I	TTAA	2 cut(s)	276, 651
TscAI	CASTG	4 cut(s)	150, 301, 328, 558
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	117, 298, 464, 609
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	4 cut(s)	150, 301, 328, 558
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	302, 389
XceI	RCATGY	2 cut(s)	415, 671
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.