Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

34233234 .. 34236276

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCAAGTACTAGCGACCAAGGAATATACCCGGGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTAGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCATTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTAGCAGCTGGAATGCCGGTGGTGGGTTTGGGCACAAGGAACCCTGACAGTTTACTGCTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAAGAAAGCAGTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

248

Amino Acids

27.57

Weight (kDa)

4.75

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 202	3.1e-22	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	25 - 207	6.8e-28	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	2 cut(s)	113, 352
AclWI	GGATC	2 cut(s)	104, 261
AcsI	RAATTY	2 cut(s)	185, 272
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	307, 335, 617
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	6 cut(s)	146, 281, 365, 379, 458, 517
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	5 cut(s)	226, 421, 521, 590, 602
AluI	AGCT	5 cut(s)	226, 421, 521, 590, 602
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	104, 261
Ama87I	CYCGRG	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	386, 599
ApoI	RAATTY	2 cut(s)	185, 272
Asp700I	GAANNNNTTC	2 cut(s)	72, 141
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	373, 611
BccI	CCATC	1 cut(s)	83
BcnI	CCSGG	2 cut(s)	32, 33
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	4 cut(s)	12, 47, 464, 653
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	387, 600
BlsI	GCNGC	2 cut(s)	388, 601
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	32, 33
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	171, 635, 664
BmrFI	CCNGG	2 cut(s)	32, 33
BmsI	GCATC	3 cut(s)	201, 320, 646
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	612, 681
BpuMI	CCSGG	2 cut(s)	32, 33
BsaBI	GATNNNNATC	3 cut(s)	108, 252, 310
BsaJI	CCNNGG	2 cut(s)	19, 31
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 335, 617
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	2 cut(s)	441, 717
Bse8I	GATNNNNATC	3 cut(s)	108, 252, 310
BseDI	CCNNGG	2 cut(s)	19, 31
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	3 cut(s)	108, 252, 310
BseLI	CCNNNNNNNGG	3 cut(s)	307, 335, 617
BseMII	CTCAG	3 cut(s)	171, 437, 591
BseNI	ACTGG	2 cut(s)	441, 717
BseRI	GAGGAG	2 cut(s)	51, 236
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	373, 611
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	32, 611
BslI	CCNNNNNNNGG	3 cut(s)	307, 335, 617
BsmAI	GTCTC	1 cut(s)	580
BsmI	GAATGC	2 cut(s)	554, 612
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	228, 629
Bsp143I	GATC	3 cut(s)	109, 253, 484
BspACI	CCGC	2 cut(s)	113, 352
BspCNI	CTCAG	3 cut(s)	172, 438, 590
BspLI	GGNNCC	3 cut(s)	171, 635, 664
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	2 cut(s)	104, 261
BsrBI	CCGCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	2 cut(s)	441, 717
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	19, 31
BssMI	GATC	3 cut(s)	109, 253, 484
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	321, 644
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	419, 552
BstDEI	CTNAG	3 cut(s)	180, 446, 577
BstEII	GGTNACC	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	112, 256, 487
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	109, 253, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
BstNSI	RCATGY	2 cut(s)	298, 554
BstPI	GGTNACC	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	30, 31
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	373, 611
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	109, 253
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	109, 253
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	5 cut(s)	177, 211, 434, 710, 741
Cac8I	GCNNGC	2 cut(s)	419, 552
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	439
Cfr9I	CCCGGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	295, 551
CviJI	RGCY	9 cut(s)	226, 339, 375, 386, 421, 521, 590, 602, 665
CviKI_1	RGCY	9 cut(s)	226, 339, 375, 386, 421, 521, 590, 602, 665
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	3 cut(s)	180, 446, 577
DpnI	GATC	3 cut(s)	111, 255, 486
DpnII	GATC	3 cut(s)	109, 253, 484
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	298, 554
FaiI	YATR	7 cut(s)	28, 86, 126, 296, 332, 345, 552
FatI	CATG	2 cut(s)	294, 550
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	387, 600
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	387, 600
FspBI	CTAG	4 cut(s)	12, 47, 464, 653
GluI	GCNGC	2 cut(s)	387, 600
GsuI	CTGGAG	2 cut(s)	612, 681
HapII	CCGG	2 cut(s)	32, 611
Hin1II	CATG	2 cut(s)	298, 554
HinfI	GANTC	2 cut(s)	104, 569
HpaII	CCGG	2 cut(s)	32, 611
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	3 cut(s)	109, 302, 316
Hpy188III	TCNNGA	6 cut(s)	65, 146, 245, 445, 503, 579
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	321, 644
HpyCH4V	TGCA	5 cut(s)	214, 389, 401, 473, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
HpyF3I	CTNAG	3 cut(s)	180, 446, 577
Hsp92II	CATG	2 cut(s)	298, 554
Kzo9I	GATC	3 cut(s)	109, 253, 484
LmnI	GCTCC	4 cut(s)	64, 120, 223, 662
Lsp1109I	GCAGC	2 cut(s)	373, 611
LweI	GCATC	3 cut(s)	201, 320, 646
MaeI	CTAG	4 cut(s)	12, 47, 464, 653
MaeIII	GTNAC	2 cut(s)	391, 689
MalI	GATC	3 cut(s)	111, 255, 486
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	3 cut(s)	109, 253, 484
MboII	GAAGA	6 cut(s)	181, 293, 302, 315, 728, 739
MflI	RGATCY	2 cut(s)	109, 253
MhlI	GDGCHC	2 cut(s)	228, 629
MluCI	AATT	4 cut(s)	72, 185, 272, 698
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	6 cut(s)	72, 175, 214, 452, 559, 676
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	2 cut(s)	72, 141
MseI	TTAA	3 cut(s)	159, 534, 678
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	32, 611
MspR9I	CCNGG	2 cut(s)	32, 33
Mva1269I	GAATGC	2 cut(s)	554, 612
MwoI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
NciI	CCSGG	2 cut(s)	32, 33
NdeII	GATC	3 cut(s)	109, 253, 484
NlaIII	CATG	2 cut(s)	298, 554
NlaIV	GGNNCC	3 cut(s)	171, 635, 664
NmuCI	GTSAC	1 cut(s)	689
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	298, 554
PaeI	GCATGC	1 cut(s)	554
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	554, 612
PdmI	GAANNNNTTC	2 cut(s)	72, 141
PfeI	GAWTC	2 cut(s)	104, 569
PkrI	GCNGC	2 cut(s)	388, 601
PscI	ACATGT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	689
PspN4I	GGNNCC	3 cut(s)	171, 635, 664
PspPI	GGNCC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	109, 253
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	159, 534, 678
SatI	GCNGC	2 cut(s)	387, 600
Sau3AI	GATC	3 cut(s)	109, 253, 484
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	32, 33
SduI	GDGCHC	2 cut(s)	228, 629
SetI	ASST	8 cut(s)	157, 228, 331, 423, 444, 523, 592, 604
SfaNI	GCATC	3 cut(s)	201, 320, 646
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	439
SmaI	CCCGGG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	123
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	72, 185, 272, 698
SsiI	CCGC	2 cut(s)	113, 352
SspMI	CTAG	4 cut(s)	12, 47, 464, 653
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	30, 31
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	321, 644
TaqI	TCGA	2 cut(s)	66, 487
TasI	AATT	4 cut(s)	72, 185, 272, 698
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	104, 569
Tru1I	TTAA	3 cut(s)	159, 534, 678
Tru9I	TTAA	3 cut(s)	159, 534, 678
TscAI	CASTG	5 cut(s)	184, 211, 441, 717, 741
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	2 cut(s)	386, 599
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	181, 347, 492
TspGWI	ACGGA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	31
TspRI	CASTG	5 cut(s)	184, 211, 441, 717, 741
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	185, 272
XceI	RCATGY	2 cut(s)	298, 554
XmaI	CCCGGG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	72, 141
XspI	CTAG	4 cut(s)	12, 47, 464, 653
ZrmI	AGTACT	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.