Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

35271135 .. 35273675

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTAGCTCTACCTCAGCTTCTTCACTATCACCACCACCTCTTCTCCCACCAATTCCCCAAAACCCATTTGCAGAGACACAACCTCACTAAACGAGGCTCTACCTTTCTCACCAGGATGTCCATTTCATCAGACCCTCGCCCACTGGACAGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCTGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTCCGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTAGTTATTGGCTTATTGCAAATGAATGTGATAGAGCAAAACCATTTCCTGACCCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

213

Amino Acids

24.52

Weight (kDa)

5.62

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	62 - 196	2.2e-09	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	64 - 197	1.7e-12	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	230, 469
AclWI	GGATC	2 cut(s)	221, 378
AcsI	RAATTY	2 cut(s)	302, 389
AfiI	CCNNNNNNNGG	2 cut(s)	424, 452
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	5 cut(s)	263, 398, 482, 496, 575
AjnI	CCWGG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	4 cut(s)	8, 19, 343, 538
AluI	AGCT	4 cut(s)	8, 19, 343, 538
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	221, 378
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	302, 389
Asp700I	GAANNNNTTC	2 cut(s)	189, 258
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	23, 103
AvaII	GGWCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	164, 581
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	318, 437
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	3 cut(s)	225, 369, 427
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 543, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 452
Bse1I	ACTGG	2 cut(s)	150, 558
Bse8I	GATNNNNATC	3 cut(s)	225, 369, 427
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	123, 333
BseJI	GATNNNNATC	3 cut(s)	225, 369, 427
BseLI	CCNNNNNNNGG	2 cut(s)	424, 452
BseMII	CTCAG	3 cut(s)	29, 288, 554
BseNI	ACTGG	2 cut(s)	150, 558
BseRI	GAGGAG	2 cut(s)	168, 353
BseXI	GCAGC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	424, 452
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	226, 370
BspACI	CCGC	2 cut(s)	230, 469
BspCNI	CTCAG	3 cut(s)	28, 289, 555
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	221, 378
BsrBI	CCGCTC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	150, 558
BssMI	GATC	2 cut(s)	226, 370
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	152, 438
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	15, 297, 563
BstF5I	GGATG	2 cut(s)	123, 333
BstKTI	GATC	2 cut(s)	229, 373
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	226, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	226, 370
BstYI	RGATCY	2 cut(s)	226, 370
BtsCI	GGATG	2 cut(s)	123, 333
BtsIMutI	CAGTG	4 cut(s)	143, 294, 328, 551
Cac8I	GCNNGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	556
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	9 cut(s)	8, 19, 99, 343, 456, 492, 503, 538, 591
CviKI_1	RGCY	9 cut(s)	8, 19, 99, 343, 456, 492, 503, 538, 591
DdeI	CTNAG	3 cut(s)	15, 297, 563
DpnI	GATC	2 cut(s)	228, 372
DpnII	GATC	2 cut(s)	226, 370
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	415
FaiI	YATR	5 cut(s)	203, 243, 413, 449, 462
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	130, 340
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	164, 581
GluI	GCNGC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	415
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	23, 103
Hpy188I	TCNGA	4 cut(s)	133, 226, 419, 433
Hpy188III	TCNNGA	5 cut(s)	182, 263, 362, 562, 628
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	2 cut(s)	152, 438
HpyCH4V	TGCA	5 cut(s)	73, 331, 506, 518, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	15, 297, 563
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	226, 370
LmnI	GCTCC	3 cut(s)	181, 237, 340
LpnPI	CCDG	6 cut(s)	100, 127, 131, 375, 539, 575
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	318, 437
MaeI	CTAG	2 cut(s)	164, 581
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	228, 372
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	2 cut(s)	226, 370
MboII	GAAGA	6 cut(s)	14, 34, 298, 410, 419, 432
MflI	RGATCY	2 cut(s)	226, 370
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	53, 189, 302, 389
MnlI	CCTC	9 cut(s)	24, 50, 89, 95, 147, 189, 292, 331, 569
MroXI	GAANNNNTTC	2 cut(s)	189, 258
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	116, 240
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	226, 370
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	415
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	2 cut(s)	189, 258
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	226, 370
RseI	CAYNNNNRTG	2 cut(s)	116, 240
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	2 cut(s)	226, 370
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	318, 437
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	116, 240
Sse9I	AATT	4 cut(s)	53, 189, 302, 389
SsiI	CCGC	2 cut(s)	230, 469
SspMI	CTAG	2 cut(s)	164, 581
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	152, 438
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	53, 189, 302, 389
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	4 cut(s)	150, 301, 328, 558
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	117, 298, 464, 617
TspRI	CASTG	4 cut(s)	150, 301, 328, 558
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	302, 389
XceI	RCATGY	1 cut(s)	415
XmnI	GAANNNNTTC	2 cut(s)	189, 258
XspI	CTAG	2 cut(s)	164, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.