Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007032.1

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

101254 .. 104132

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007032.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atggtagctctacctcagcttcttcactatcagcaccaccgcttctcccaccaattccccaaaacccatttgcagagacacaacctcactaaacgaggctctacctttctcaccaggatgtccatttcatcagaccctcgcccactagacaggtacattatctatcatcaggctggcctgaatcacttcccattatgttgtggcagtaaatgttctctagcatttgtcgctcctctcgaagcaattctatttgatatagatggaacattgtgtgattcagatccgctccattattatgctttccgtgaaatgcttcaagaagtgggttttaatggtggggttcctatcactgaggaattcttcattgagaatataagtgggatgcacaatgaggagctctgtggtgttctctttcctgattgggatctccaaagagcaagaaatttttttgaagataaggaagacatgctccgaagattggcatctgaacagttagaacctatgaagggcttacataagttgcgggaatggattgaaaatcaaggcttgaaacgggctgcagtaacaaatgcaccaagaccaaatggcgagctattagtatcagcactggaactcctgagtttctttcaagttctagttattacaaatgaatgtgatagagcaaaaccatttcctgacccttacttgaaagctctccaagcacttaatgtgtcaaataagcatgcattcgtctttgaggattctgtctcaggattaaaagctggagtagcagctggaatgccggtggtgggtttaggcacaaggaaccctgacagtttactgctagatgctggagcctcctttgttattaaagattttggtgacccaaaattgtgggaatcattggaagagtcggagaagaaagcagtgaaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

305

Amino Acids

34.47

Weight (kDa)

5.95

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	3 cut(s)	40, 284, 523
AclWI	GGATC	2 cut(s)	275, 432
AcsI	RAATTY	2 cut(s)	356, 442
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	478, 506, 788
AgsI	TTSAA	6 cut(s)	317, 452, 536, 550, 629, 688
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	7 cut(s)	8, 19, 397, 592, 692, 761, 773
AluI	AGCT	7 cut(s)	8, 19, 397, 592, 692, 761, 773
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	70, 751
AlwI	GGATC	2 cut(s)	275, 432
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	557, 770
ApoI	RAATTY	2 cut(s)	356, 442
Asp700I	GAANNNNTTC	3 cut(s)	185, 243, 312
AsuHPI	GGTGA	2 cut(s)	103, 872
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	544, 782
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	70, 751
BfaI	CTAG	4 cut(s)	146, 218, 635, 824
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	2 cut(s)	558, 771
BlsI	GCNGC	2 cut(s)	559, 772
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	342, 806, 835
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	3 cut(s)	372, 491, 817
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	783, 852
Bpu10I	CCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	3 cut(s)	279, 423, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	478, 506, 788
Bse118I	RCCGGY	1 cut(s)	781
Bse1I	ACTGG	1 cut(s)	612
Bse8I	GATNNNNATC	3 cut(s)	279, 423, 481
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	123, 387
BseJI	GATNNNNATC	3 cut(s)	279, 423, 481
BseLI	CCNNNNNNNGG	3 cut(s)	478, 506, 788
BseMII	CTCAG	4 cut(s)	29, 342, 608, 762
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	222, 407
BseXI	GCAGC	2 cut(s)	544, 782
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	782
BslI	CCNNNNNNNGG	3 cut(s)	478, 506, 788
BsmAI	GTCTC	2 cut(s)	70, 751
BsmI	GAATGC	2 cut(s)	725, 783
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	280, 424
BspACI	CCGC	3 cut(s)	40, 284, 523
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	4 cut(s)	28, 343, 609, 761
BspLI	GGNNCC	3 cut(s)	342, 806, 835
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	275, 432
BsrBI	CCGCTC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	781
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	781
BssMI	GATC	2 cut(s)	280, 424
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	492, 815
Bst6I	CTCTTC	1 cut(s)	882
BstC8I	GCNNGC	3 cut(s)	175, 590, 723
BstDEI	CTNAG	4 cut(s)	15, 351, 617, 748
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	123, 387
BstKTI	GATC	2 cut(s)	283, 427
BstMAI	GTCTC	2 cut(s)	70, 751
BstMBI	GATC	2 cut(s)	280, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 698, 767
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	469, 725
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	544, 782
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	2 cut(s)	280, 424
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	2 cut(s)	280, 424
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	123, 387
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	3 cut(s)	348, 605, 912
Cac8I	GCNNGC	3 cut(s)	175, 590, 723
Cfr10I	RCCGGY	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	466, 722
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	15, 351, 617, 748
DpnI	GATC	2 cut(s)	282, 426
DpnII	GATC	2 cut(s)	280, 424
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	2 cut(s)	469, 725
FaiI	YATR	8 cut(s)	196, 257, 297, 374, 467, 503, 516, 723
FatI	CATG	2 cut(s)	465, 721
FauI	CCCGC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	558, 771
FokI	GGATG	2 cut(s)	130, 394
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	558, 771
FspBI	CTAG	4 cut(s)	146, 218, 635, 824
GluI	GCNGC	2 cut(s)	558, 771
GsuI	CTGGAG	2 cut(s)	783, 852
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	782
Hin1II	CATG	2 cut(s)	469, 725
HinfI	GANTC	5 cut(s)	181, 275, 740, 878, 890
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	103, 872
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	5 cut(s)	133, 280, 473, 487, 895
Hpy188III	TCNNGA	6 cut(s)	236, 317, 416, 616, 674, 750
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	492, 815
HpyCH4V	TGCA	5 cut(s)	73, 385, 560, 572, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 698, 767
HpyF3I	CTNAG	4 cut(s)	15, 351, 617, 748
Hsp92II	CATG	2 cut(s)	469, 725
Kzo9I	GATC	2 cut(s)	280, 424
LmnI	GCTCC	5 cut(s)	235, 291, 394, 474, 833
Lsp1109I	GCAGC	2 cut(s)	544, 782
LweI	GCATC	3 cut(s)	372, 491, 817
MaeI	CTAG	4 cut(s)	146, 218, 635, 824
MaeIII	GTNAC	2 cut(s)	562, 860
MalI	GATC	2 cut(s)	282, 426
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	2 cut(s)	280, 424
MboII	GAAGA	7 cut(s)	14, 352, 464, 473, 486, 899, 910
MflI	RGATCY	2 cut(s)	280, 424
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	5 cut(s)	53, 243, 356, 442, 869
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	9 cut(s)	24, 89, 95, 147, 243, 346, 385, 730, 847
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	3 cut(s)	185, 243, 312
MseI	TTAA	4 cut(s)	330, 705, 755, 849
MslI	CAYNNNNRTG	2 cut(s)	116, 294
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	2 cut(s)	725, 783
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	227, 698, 767
NdeII	GATC	2 cut(s)	280, 424
NlaIII	CATG	2 cut(s)	469, 725
NlaIV	GGNNCC	3 cut(s)	342, 806, 835
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	469, 725
PaeI	GCATGC	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	725, 783
PdmI	GAANNNNTTC	3 cut(s)	185, 243, 312
PfeI	GAWTC	4 cut(s)	181, 275, 740, 878
PkrI	GCNGC	2 cut(s)	559, 772
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	342, 806, 835
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	280, 424
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	2 cut(s)	116, 294
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	330, 705, 755, 849
SatI	GCNGC	2 cut(s)	558, 771
Sau3AI	GATC	2 cut(s)	280, 424
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	3 cut(s)	372, 491, 817
SfcI	CTRYAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	116, 294
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	5 cut(s)	53, 243, 356, 442, 869
SsiI	CCGC	3 cut(s)	40, 284, 523
SspMI	CTAG	4 cut(s)	146, 218, 635, 824
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	492, 815
TaqI	TCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	53, 243, 356, 442, 869
TfiI	GAWTC	4 cut(s)	181, 275, 740, 878
Tru1I	TTAA	4 cut(s)	330, 705, 755, 849
Tru9I	TTAA	4 cut(s)	330, 705, 755, 849
TscAI	CASTG	3 cut(s)	355, 612, 912
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	557, 770
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	4 cut(s)	117, 352, 518, 663
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	355, 612, 912
XapI	RAATTY	2 cut(s)	356, 442
XceI	RCATGY	2 cut(s)	469, 725
XmnI	GAANNNNTTC	3 cut(s)	185, 243, 312
XspI	CTAG	4 cut(s)	146, 218, 635, 824
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.