Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

30524623 .. 30532874

Gene Structure 8252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028950

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTAGCTCTACCTCAGCTTCTTCACTATCACCACCACCTCTTCTCCCACCAATTCCCCAAAACCCATTTGCAGAGACACAACCTCACTAAACGAGGCTCTACCTTTCTCACCAGGATGTCCATTTCATCAGACCCTCGCCCACTGGACAGTAAATGTTCTCTAGCATTTGTTGCTCCTCTCGAACCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGGCTTACATAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGAGTTTCTTTGAAGTTCTAGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGCGTCAAATAAGCATGCTTTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGGTGGGTTTGGGCACAAGGAACCCTGACAGTTTACTGCTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGCTGGAGAAGAAAGCAGTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

226

Amino Acids

25.07

Weight (kDa)

6.36

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	89 - 184	3.2e-15	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	96 - 179	2.7e-12	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	230, 283
AclWI	GGATC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	5 cut(s)	263, 296, 310, 389, 448
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	7 cut(s)	8, 19, 352, 452, 521, 533, 652
AluI	AGCT	7 cut(s)	8, 19, 352, 452, 521, 533, 652
Alw26I	GTCTC	2 cut(s)	70, 511
AlwI	GGATC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	317, 530
Asp700I	GAANNNNTTC	2 cut(s)	189, 258
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	23, 103, 632
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	304, 542
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	70, 511
BfaI	CTAG	3 cut(s)	164, 395, 584
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	318, 531
BlsI	GCNGC	2 cut(s)	319, 532
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	566, 595
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	577
BpmI	CTGGAG	3 cut(s)	543, 612, 674
Bpu10I	CCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	150, 372, 648
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	29, 368, 522
BseNI	ACTGG	3 cut(s)	150, 372, 648
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	304, 542
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	70, 511
BsmI	GAATGC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	226, 415
BspACI	CCGC	2 cut(s)	230, 283
BspCNI	CTCAG	3 cut(s)	28, 369, 521
BspLI	GGNNCC	2 cut(s)	566, 595
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	642
BsrBI	CCGCTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	3 cut(s)	150, 372, 648
BssAI	RCCGGY	1 cut(s)	541
BssMI	GATC	2 cut(s)	226, 415
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	152, 575
Bst6I	CTCTTC	2 cut(s)	47, 642
BstAPI	GCANNNNNTGC	2 cut(s)	173, 467
BstC8I	GCNNGC	2 cut(s)	350, 483
BstDEI	CTNAG	3 cut(s)	15, 377, 508
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	229, 418
BstMAI	GTCTC	2 cut(s)	70, 511
BstMBI	GATC	2 cut(s)	226, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 458, 467, 527
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	485
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	304, 542
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	4 cut(s)	143, 365, 641, 672
Cac8I	GCNNGC	2 cut(s)	350, 483
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	459
CviAII	CATG	1 cut(s)	482
DdeI	CTNAG	3 cut(s)	15, 377, 508
DpnI	GATC	2 cut(s)	228, 417
DpnII	GATC	2 cut(s)	226, 415
Eam1104I	CTCTTC	2 cut(s)	47, 642
EarI	CTCTTC	2 cut(s)	47, 642
Eco47I	GGWCC	1 cut(s)	370
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	485
FaiI	YATR	4 cut(s)	203, 243, 276, 483
FatI	CATG	1 cut(s)	481
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	318, 531
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	318, 531
FspBI	CTAG	3 cut(s)	164, 395, 584
GluI	GCNGC	2 cut(s)	318, 531
GsuI	CTGGAG	3 cut(s)	543, 612, 674
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	1 cut(s)	459
Hin1II	CATG	1 cut(s)	485
HinfI	GANTC	2 cut(s)	221, 500
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	3 cut(s)	23, 103, 632
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	2 cut(s)	133, 226
Hpy188III	TCNNGA	5 cut(s)	182, 263, 376, 434, 510
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	152, 575
HpyCH4V	TGCA	4 cut(s)	73, 320, 332, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 458, 467, 527
HpyF3I	CTNAG	3 cut(s)	15, 377, 508
Hsp92II	CATG	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	226, 415
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	3 cut(s)	181, 237, 593
Lsp1109I	GCAGC	2 cut(s)	304, 542
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	164, 395, 584
MaeIII	GTNAC	2 cut(s)	322, 620
MalI	GATC	2 cut(s)	228, 417
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	2 cut(s)	226, 415
MboII	GAAGA	4 cut(s)	14, 34, 659, 670
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	53, 189, 629
MnlI	CCTC	9 cut(s)	24, 50, 89, 95, 147, 189, 383, 490, 607
MroXI	GAANNNNTTC	2 cut(s)	189, 258
MseI	TTAA	2 cut(s)	465, 609
MslI	CAYNNNNRTG	2 cut(s)	116, 240
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	4 cut(s)	173, 458, 467, 527
NdeII	GATC	2 cut(s)	226, 415
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	2 cut(s)	566, 595
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	642
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	2 cut(s)	189, 258
PfeI	GAWTC	2 cut(s)	221, 500
PkrI	GCNGC	2 cut(s)	319, 532
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	566, 595
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	116, 240
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	465, 609
SatI	GCNGC	2 cut(s)	318, 531
Sau3AI	GATC	2 cut(s)	226, 415
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	2 cut(s)	116, 240
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	3 cut(s)	53, 189, 629
SsiI	CCGC	2 cut(s)	230, 283
SspMI	CTAG	3 cut(s)	164, 395, 584
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	152, 575
TaqI	TCGA	2 cut(s)	183, 418
TasI	AATT	3 cut(s)	53, 189, 629
TfiI	GAWTC	2 cut(s)	221, 500
Tru1I	TTAA	2 cut(s)	465, 609
Tru9I	TTAA	2 cut(s)	465, 609
TscAI	CASTG	4 cut(s)	150, 372, 648, 672
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	317, 530
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	117, 423
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	4 cut(s)	150, 372, 648, 672
VpaK11BI	GGWCC	1 cut(s)	370
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	2 cut(s)	189, 258
XspI	CTAG	3 cut(s)	164, 395, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.