Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004270.1

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

20707 .. 21135

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004270.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgaagggcttacataagttgcgggaatggattgaaaatcaaggcttgaaacgggctgcagtaacaaatgcaccaagaccaaatggcgagctattagtatcagcactggacctcctgagtttctttgaagttctagttattgcaaatgaatgtgatagagcaaaaccatttcctgacccttacttgaaagctctccaagcacttaatgtgtcaaataagcatgcattcgtctttgaggattttgtctcaggagtaaaagctggagtggcagctggaatgccggtggtgggtttgggcacaaggaaccctatgttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

9.25

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	35, 49, 128, 187, 316
AluBI	AGCT	4 cut(s)	91, 191, 260, 272
AluI	AGCT	4 cut(s)	91, 191, 260, 272
Alw26I	GTCTC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	56, 269
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	43, 281
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	57, 270
BlsI	GCNGC	2 cut(s)	58, 271
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	107, 261
BseNI	ACTGG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	43, 281
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	2 cut(s)	224, 282
Bsp1286I	GDGCHC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	108, 260
BspLI	GGNNCC	1 cut(s)	305
BspMAI	CTGCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	89, 222
BstDEI	CTNAG	2 cut(s)	116, 247
BstMAI	GTCTC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 266
BstNSI	RCATGY	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	43, 281
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	89, 222
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	7 cut(s)	9, 45, 56, 91, 191, 260, 272
CviKI_1	RGCY	7 cut(s)	9, 45, 56, 91, 191, 260, 272
DdeI	CTNAG	2 cut(s)	116, 247
Eco47I	GGWCC	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	1 cut(s)	224
FaiI	YATR	3 cut(s)	15, 222, 311
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	57, 270
Fsp4HI	GCNGC	2 cut(s)	57, 270
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	57, 270
GsuI	CTGGAG	1 cut(s)	282
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	224
HpaII	CCGG	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	115, 173, 249
HpyCH4V	TGCA	4 cut(s)	59, 71, 143, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 266
HpyF3I	CTNAG	2 cut(s)	116, 247
Hsp92II	CATG	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	92, 128, 186, 234, 246, 258, 294
Lsp1109I	GCAGC	2 cut(s)	43, 281
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	299
MnlI	CCTC	2 cut(s)	122, 229
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	281
Mva1269I	GAATGC	2 cut(s)	224, 282
MwoI	GCNNNNNNNGC	2 cut(s)	197, 266
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PctI	GAATGC	2 cut(s)	224, 282
PkrI	GCNGC	2 cut(s)	58, 271
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	57, 270
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	5 cut(s)	93, 114, 193, 262, 274
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	109
SphI	GCATGC	1 cut(s)	224
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	56, 269
TspDTI	ATGAA	2 cut(s)	17, 162
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	134
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.