Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

39998036 .. 39999219

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG211900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAATTGGCATCTGAACAGTTAGAACCTATGAAGGGTTTACGTAAGTTGCGGGAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGGGTTTCTTTGAAGTTCTTGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGGTGGGTTTAGGCACAAGGAACCCTGACAGTTTACTGTTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAAGAAAGCAGTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

167

Amino Acids

18.36

Weight (kDa)

7.69

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	20 - 126	1.1e-17	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	21 - 121	8.2e-15	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 109
AclWI	GGATC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	92, 374
AgsI	TTSAA	5 cut(s)	58, 122, 136, 215, 274
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	178, 278, 347, 359
AluI	AGCT	4 cut(s)	178, 278, 347, 359
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	143, 356
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	130, 368
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	144, 357
BlsI	GCNGC	2 cut(s)	145, 358
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	392, 421
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	77, 403
BpmI	CTGGAG	2 cut(s)	369, 438
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 374
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	198, 474
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	92, 374
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	198, 474
BseXI	GCAGC	2 cut(s)	130, 368
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	92, 374
BsmAI	GTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	21, 241
BspACI	CCGC	2 cut(s)	25, 109
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	392, 421
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	198, 474
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	21, 241
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	78, 401, 408
Bst6I	CTCTTC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	176, 309
BstDEI	CTNAG	1 cut(s)	334
BstEII	GGTNACC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	24, 244
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	2 cut(s)	21, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 353
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	144
BstSNI	TACGTA	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	130, 368
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	191, 467, 498
Cac8I	GCNNGC	2 cut(s)	176, 309
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	7 cut(s)	132, 143, 178, 278, 347, 359, 422
CviKI_1	RGCY	7 cut(s)	132, 143, 178, 278, 347, 359, 422
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	2 cut(s)	23, 243
DpnII	GATC	2 cut(s)	21, 241
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco105I	TACGTA	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	311
FaiI	YATR	3 cut(s)	38, 89, 309
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	144, 357
Fsp4HI	GCNGC	2 cut(s)	144, 357
GluI	GCNGC	2 cut(s)	144, 357
GsuI	CTGGAG	2 cut(s)	369, 438
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	1 cut(s)	311
HinfI	GANTC	2 cut(s)	16, 326
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	98, 404
Hpy188I	TCNGA	2 cut(s)	21, 73
Hpy188III	TCNNGA	3 cut(s)	58, 260, 336
Hpy8I	GTNNAC	2 cut(s)	98, 404
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	78, 401, 408
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	146, 158, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 353
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	21, 241
LmnI	GCTCC	2 cut(s)	32, 419
Lsp1109I	GCAGC	2 cut(s)	130, 368
LweI	GCATC	2 cut(s)	77, 403
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	148, 446
MalI	GATC	2 cut(s)	23, 243
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	2 cut(s)	21, 241
MboII	GAAGA	2 cut(s)	485, 496
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	2 cut(s)	62, 455
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	3 cut(s)	209, 316, 433
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	291, 435
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	284, 353
NdeII	GATC	2 cut(s)	21, 241
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	2 cut(s)	392, 421
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	16, 326
PkrI	GCNGC	2 cut(s)	145, 358
Ppu21I	YACGTR	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	392, 421
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	291, 435
SatI	GCNGC	2 cut(s)	144, 357
Sau3AI	GATC	2 cut(s)	21, 241
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	7 cut(s)	88, 103, 180, 201, 280, 349, 361
SfaNI	GCATC	2 cut(s)	77, 403
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	35
SnaBI	TACGTA	1 cut(s)	101
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	62, 455
SsiI	CCGC	2 cut(s)	25, 109
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	78, 401, 408
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	62, 455
TfiI	GAWTC	2 cut(s)	16, 326
Tru1I	TTAA	2 cut(s)	291, 435
Tru9I	TTAA	2 cut(s)	291, 435
TscAI	CASTG	3 cut(s)	198, 474, 498
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	143, 356
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	104, 249
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	3 cut(s)	198, 474, 498
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.